FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi748.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi748.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences862
Sequences flagged as poor quality0
Sequence length301
%GC41

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA43350.232018561484914No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA667.65661252900232No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA546.2645011600928076No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA293.3642691415313224No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC263.0162412993039442No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC232.668213457076566No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATTCA222.5522041763341066No Hit
CGGAAGGATCATTACCACGGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA202.320185614849188No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA101.160092807424594No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA80.9280742459396751No Hit
CGGAAGGATCATTACCACCGTGGCAGCAGTGGATGTCTAGGCTCTGTCTC80.9280742459396751No Hit
CGGAAGGATCATTACCACCTAAAAAACTTTCCACGTGAACCGTATTCAAC50.580046403712297No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTTA40.46403712296983757No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA40.46403712296983757No Hit
GGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA30.34802784222737815No Hit
CTGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA30.34802784222737815No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGTACCGTATTCA30.34802784222737815No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG30.34802784222737815No Hit
CGGAAGGATTATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA30.34802784222737815No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGACCCGTATTCA30.34802784222737815No Hit
CGGAAGGATAATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA30.34802784222737815No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATCAA20.23201856148491878No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTTCCACGTGAACCGTATTCA20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCC20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGCATTCA20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTGAAAAACTTTCCACGTGAACCGTATTCA20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTTCCACGTGAACCGTATTCA20.23201856148491878No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTTCCACGTGAACCGTATTCA20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATCCA20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCGCGTGAACCGTATTCA20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATCAAA20.23201856148491878No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATCAA20.23201856148491878No Hit
CGGAAGTATCATTACCACGGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACTTGAACCGTATTCAA10.11600928074245939No Hit
AGACCAGGGATGTATATCGGCGATACCGACGACGGCTCCGGCCTCCACCA10.11600928074245939No Hit
CGGAAGGATCATTACCACCGTGGCAGCCGTGAATGTCTAGGCTCTGTCTC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAATCTTTCCACGTGAACCGTATCAA10.11600928074245939No Hit
CGGAAGGATCATTACCACGGCAGCAGTGGATTCCTAGGCTCTGTCTCTTA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTCAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA10.11600928074245939No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGCCTC10.11600928074245939No Hit
CGTAAGGATTATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGGACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAG10.11600928074245939No Hit
CGGAAGGATCATTACCACACGTAAAAACTTTCCACGTGAACCGTATCAAC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCG10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAGCCGTATTCA10.11600928074245939No Hit
CTGAAGGATCATTACCACGGCAGCAGTGGATGTCCAGGCTCTGTCTCTTA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCACATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCCCACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTTCCACGTGACCCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACATTCCACGTGAACCGTATCAAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAATCTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTTCACGTGAACAGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTATCAAC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTACTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTTCCACGTGACCCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATAAA10.11600928074245939No Hit
CGGAAGGAGTAGTACAACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACTCCTAAAAAACTTTCCACGTGAACCGTATCAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGTACCGTATTCAT10.11600928074245939No Hit
CGTAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA10.11600928074245939No Hit
CGGAAGGATCTTTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCTACGTGAACCGTATTCA10.11600928074245939No Hit
TGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACCGAATTCA10.11600928074245939No Hit
CGGAAAGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTTTC10.11600928074245939No Hit
CGGAAGTATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC10.11600928074245939No Hit
CGGAAGGAGCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTTCCACGTGACCCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACCGTGGAAGCAGTGGATGTCTAGGCTCTGTCTC10.11600928074245939No Hit
CGGAAGGATCATTACCACCGTGGCAGCCGTGGATGTCTAGGCTCTGTCTC10.11600928074245939No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA10.11600928074245939No Hit
CGGAAGGATCATTACCACGAGACAAGCAGTGGATGTCTAGGCTCTGTCTC10.11600928074245939No Hit
GGAAGGATCATTACCACTAGACCAGCAGTGGATGTCTAGGCTCTGTCTCT10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAGAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTCCCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAATGATCATTACCACGGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.11600928074245939No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA10.11600928074245939No Hit
CGTAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTGGGCTCTGTCTC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTACTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTGTTCA10.11600928074245939No Hit
CGGAATGATCATTACCACACCTAAAAAACTTTCCACGAGAACCGTATGCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCATGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTTTTCA10.11600928074245939No Hit
CGGAAGATCATTACCACCGTGGCAGCAGTGGATGTCTAGGCTCTGTCTCT10.11600928074245939No Hit
CGGAAGGATCATTACCACACCCAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACTTAAACCGTATTCC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAAACGTATTCA10.11600928074245939No Hit
CGGAATGATCATTACCACGAGACCAGCAGTGGATGTGTAGGCTCTGTTTC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCTGTATTCA10.11600928074245939No Hit
CGGAAGGTTCATTACCACACCTAAAAATCTTTCCACGTGATCCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCACA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCATATCAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCTTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACGGCAGCAGCGGATGTCTAGGCTCTGTCTCTTA10.11600928074245939No Hit
CGGAATGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGTCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTGTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGACGTCTAGGCACTGTCTC10.11600928074245939No Hit
CGGTAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGATGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTACTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCATACCTAAAAACTTTCCACGTGAACCGTATCAAC10.11600928074245939No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACCTAAAAAACCTTCCACGTGAACCGTATTCAAC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATTCAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTTAACCGTATTCA10.11600928074245939No Hit
CGGAAGGACCATTACCACGGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTCTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA10.11600928074245939No Hit
ACGCCCAAGCAGATTTACAACGACCCGGCCAATCTGTTTGTGGCCAGCTT10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAATTTTCCACGTGAACCGTATCAAC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAATAACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGATCCGTATCAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTATCAA10.11600928074245939No Hit
CGGATTACCACGGCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACACAT10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC10.11600928074245939No Hit
CGGAAGGATCATTCCCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAACACTTTCCACGTGAACCGTATTCA10.11600928074245939No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGGACCGTATTCA10.11600928074245939No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)