FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi746.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi746.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences211
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC6932.70142180094787No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC4420.85308056872038No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT2210.42654028436019No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT209.47867298578199No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC31.4218009478672986No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA31.4218009478672986No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA20.9478672985781991No Hit
ACGCCCAAGCAGATTTACGACGACCCGGCCAATCTGTTCGTGGCCAGCTT20.9478672985781991No Hit
ACACCCAAGCAGATTTACATCACGGTAGTTGAGATCGGACTTCATAAGGT20.9478672985781991No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC10.47393364928909953No Hit
CGGAAGGATAATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
CGGAAGGATAATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCCTGTCTCT10.47393364928909953No Hit
CGGAAGGATCATGACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGACAAGCAGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCCCTGTCTC10.47393364928909953No Hit
CGGAAGGATCATTACCACTCGTCGGCATCAGTGGATGTCTAGGCTCTGTC10.47393364928909953No Hit
CGGAAGGATCACTACCACTCGGCAGCAGTGGATGTCTAGGCCCTGTCTCT10.47393364928909953No Hit
AGCCCGCGTATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG10.47393364928909953No Hit
CGGAAGGATCATTACAACGAGACAGCAGTGGATGCCTAGGCTCTGTCTCT10.47393364928909953No Hit
CGGGCTGCAATGTATATCGGCTCCACCGGTGCCCGCGGCCTGCACCACCT10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGTTCTGTCTC10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTA10.47393364928909953No Hit
CGGAAGGATAATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.47393364928909953No Hit
CGGAAGGATCATTACCAATCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC10.47393364928909953No Hit
CGGGGGGGGCGGGAGCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT10.47393364928909953No Hit
CGGAAGGATCATTACCACTCGTCGGCGGCAGTGGATGTCTAGGCTCTGTC10.47393364928909953No Hit
ACGCCCCAGCAGCTCTACATCACGGTAGTTGAGATCGGACTTCATAAGGT10.47393364928909953No Hit
CGGAAGGATCATTACCACCAGACCAGCCGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTA10.47393364928909953No Hit
CGGAAGGATCATTACCACTCGTCAGCATGGATGTCTAGGCTCTGTCTCTT10.47393364928909953No Hit
AGGCCGGCCATGTATATAGGTGGCACCGACGCCAACGCGCTGCACCATCT10.47393364928909953No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCCCTCACATC10.47393364928909953No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTATCTGTAGGTG10.47393364928909953No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.47393364928909953No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCATGTGAACCGTATCAAT10.47393364928909953No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATTTCTAGGCTCTGTCTCT10.47393364928909953No Hit
CGGAAGGATTATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
CGGAAGGATCATTACCACTCGTTAGCAGTGGATGTCTAGGCTCTGTCTCT10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGATCAGCAGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTATGCTCTGTCTCT10.47393364928909953No Hit
ACGCCCAAGCAGATTTACATCACGGTAGTTGAGATCGGACTTCATAAGGT10.47393364928909953No Hit
CGGAAGGATCATTACCACGAGACGAGCAGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
CAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
CGGAAGGATAATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC10.47393364928909953No Hit
GGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTCT10.47393364928909953No Hit
CGGAAGGATCATTACCACACCTAAAATACTATCCACGTGAACCGTTAAGC10.47393364928909953No Hit
CGTCCCGGGATGTATATAGGCGACACCGACGACGGGTCGGGCCTGCATCA10.47393364928909953No Hit
CGGAAGGATCATTACCACCCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC10.47393364928909953No Hit
CGGAAGGAGGAGGAAGAAGAGAAAGAAGAGGAAGGGGAGGCTCTGTCTCT10.47393364928909953No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC10.47393364928909953No Hit
CGGAAGGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTTCGGT10.47393364928909953No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)