FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi744.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi744.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3304
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC105231.840193704600484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT60218.220338983050848No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA55816.888619854721547No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTGCTCGTAATCTC661.9975786924939467No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC601.8159806295399514No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT411.2409200968523002No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC401.2106537530266344No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT330.9987893462469734No Hit
CGGAAGGATCATTACCACGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC290.8777239709443099No Hit
CGGAAGGATCATTACCACACTACAGCAGTGGATGTCTAGGCTCTGTCTCT280.847457627118644No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA240.7263922518159807No Hit
CGGAAGGATCATTACCACGAGCAGCAGTGGATGTCTAGGCTCTGTCTCTT170.5145278450363197No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC110.3329297820823245No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA90.2723970944309927No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC90.2723970944309927No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACATCTGCAGCAGTGGATGT90.2723970944309927No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACTGTCGTTAT80.24213075060532688No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAAACA80.24213075060532688No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCG80.24213075060532688No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTAAACA80.24213075060532688No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC70.211864406779661No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC70.211864406779661No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTATCAAC70.211864406779661No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC70.211864406779661No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC70.211864406779661No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACTGTCGTTATTT70.211864406779661No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.211864406779661No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCATTAT60.18159806295399517No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC60.18159806295399517No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC60.18159806295399517No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC60.18159806295399517No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.18159806295399517No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC60.18159806295399517No Hit
CGGAAGGATCATTACCACACCAAAAAGCTATCCACGTGAACCGTTAAACA50.1513317191283293No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACAGCAGTGGATGTCTAGGC50.1513317191283293No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAACA50.1513317191283293No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC50.1513317191283293No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAAACAA50.1513317191283293No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACTGTCGTTAT50.1513317191283293No Hit
CGGAAGGATCATTACCAAACCAAAAAACTATCCACGTGAACCGTTAAACA50.1513317191283293No Hit
TGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA50.1513317191283293No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC50.1513317191283293No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC50.1513317191283293No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.1513317191283293No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGGACCGTTAAACA50.1513317191283293No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.1513317191283293No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACTGTCGTTAT40.12106537530266344No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC40.12106537530266344No Hit
CGGAAGGATCATTACCACACCAAGAAACTATCCACGTGAACCGTTAAACA40.12106537530266344No Hit
CGGAAGGATCATTACCACCAAAAAACTATCCACGTGAACCGTTAAACAAG40.12106537530266344No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAGACA40.12106537530266344No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACTGTCGTTAT40.12106537530266344No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT40.12106537530266344No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)