FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi742.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi742.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences818
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT38947.55501222493888No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT15619.070904645476773No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA759.168704156479219No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC344.156479217603912No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT50.6112469437652812No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC40.4889975550122249No Hit
CGGAAGGATCATTACCAAGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.36674816625916873No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.36674816625916873No Hit
CGGAAGGATCATTACCAAGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA30.36674816625916873No Hit
CGGAAGGATTATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.24449877750611246No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCACGGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA20.24449877750611246No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTCTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGTACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCATGTGAACCACTTTGTAT20.24449877750611246No Hit
CGTAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCCCTGTCTCTTA20.24449877750611246No Hit
CTGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTATCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCCCACCAAAAACTATCCACGTGAACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC20.24449877750611246No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG20.24449877750611246No Hit
CGGAAGGATCATTACCACGAGACAGCAGTTGATGTCTAGGCTCTGTCTCT20.24449877750611246No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.24449877750611246No Hit
CGGAAGGATCATTACCACGAGATAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACTACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGTCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACAACAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACTACAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACTCCGAGCCCACGCGACAGCAGTGGATGTCTAG10.12224938875305623No Hit
CGGAAGGATCATTACCACAGTGGATGTCTAGGCTCTGTCCCTTATACACA10.12224938875305623No Hit
AGGAAGGAGAAGGAACACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGATGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAATCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTAAATTGGTAAAATA10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACTACACCAAAAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTCTCTCTTA10.12224938875305623No Hit
GGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT10.12224938875305623No Hit
CGGAAGGATCATTACCACGTGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACAGCAGTGGAAGTCTAGGCTCTGTCTCTTATAC10.12224938875305623No Hit
CGTAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGAGCATTACCACAGCAGGGGATGTCTAGGCTCTGTCTCTTATAC10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACGTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTAACA10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAACAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATAATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATACCACACCAAAAACTATCCACGTGAACCACTTTGTATT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGCTCTTAT10.12224938875305623No Hit
CGGAAGGATCATACCACGAGACAGCAGTGGATGTCTCGGCTCTGTCTCTT10.12224938875305623No Hit
CGGAATGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTTCTTTT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGATCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGAAGCAGTGGATGTCTAGGCTCTGTCTCTT10.12224938875305623No Hit
ACGCCCAAGCAGATTTACAACGACCCGGCCAACCTGTTCGTGGCCAGCTT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTTCCACGTGACCCGTATTCA10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACACTCTACGCGAACACCTTTTTAT10.12224938875305623No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCCCTGTCTCTTATACAC10.12224938875305623No Hit
ACACCCAAGCAGATTTACAACGACCCGGCCAACCTGTTCGTGGCCAGCTT10.12224938875305623No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACAACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTAACACGACAGCAGTGGATTGTCTAGGCTCGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACTCCGAGCCCACGAGACCGTAGCGACTCTCGTA10.12224938875305623No Hit
CGGAAGGTCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAACAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGGCAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCACTTTGTA10.12224938875305623No Hit
CGGAAGGATCATTACCACGATAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGTAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGCTCTGTCTCTT10.12224938875305623No Hit
GAGTAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGGATGC10.12224938875305623No Hit
CGGAAGGATCATTACCAAGAGACAGCAGTGGATGTCTAGGCTATGTCTCT10.12224938875305623No Hit
CGGAAGAATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCATTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCCTCTGTCTCTT10.12224938875305623No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACTACAGCAGTGGATGTCTAGGCTCTGTCCTCTT10.12224938875305623No Hit
CGGAAGGATCATTACCACGGGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGGAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGTATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTTTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACAACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGTATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCCCTGTCTCTTATAC10.12224938875305623No Hit
CGGAAGGATCATTCCACACCAAAAACTATCCACGCGAACCACTTTGTATT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCA10.12224938875305623No Hit
ACGCCCAAGCAGATCTACAACGACCCGGCCAATCTGTTCGTGGCCAGCTT10.12224938875305623No Hit
CGGAAGGATCATTACCACAGCAGTGGATGGCTAGGCTCTGTCTCTTATAC10.12224938875305623No Hit
CGGAAGGATCATTACCACAAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGCTCTT10.12224938875305623No Hit
CGGAATATCATTACCACACCAAAAACTATCCACGTGCACCCCTTTGTATT10.12224938875305623No Hit
CGGAAGTATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGTAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATTATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATTATTACCACGAGACGGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAACTATCCACGTGAACCACTTTGTATT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACCGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTATACACAT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGGGTGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCCTTAT10.12224938875305623No Hit
CAGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC10.12224938875305623No Hit
CGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAATA10.12224938875305623No Hit
CGGAAGGACCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.12224938875305623No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCGTCTCTT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCACATCTCCG10.12224938875305623No Hit
CGGAAGGATCATTACCACTACAGCAGTGGATGTCTAGGCTCTGTCTTTTA10.12224938875305623No Hit
CGGAAGGATCATTCCACACCAAAAACTATCCACGTGAACCCCTTTGTATT10.12224938875305623No Hit
CGGAAGGATCTTTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.12224938875305623No Hit
CGGAAGGATCATTACCACGACATCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTGGCTCTGTCTCTTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCACGGGAAACGTATCAAC10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAATCTATCCACGTGAACCACTTTGTATT10.12224938875305623No Hit
CGGAAAGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA10.12224938875305623No Hit
AGGAAGGATCATTACCAAACCTAAAAAACTTTCCACGTGAACCGTATTCA10.12224938875305623No Hit
ACACCCAAGCAGATTTACAACGACCCGGCCAATCTGTTCGTGGCCAGCTT10.12224938875305623No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCCGTCTCTTA10.12224938875305623No Hit
CGGAAGGAGCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC10.12224938875305623No Hit
CGGAAGGATCATTACCACACCAAAAATTATCCACGTGAACCACTTTGTAT10.12224938875305623No Hit
CGGAAGATGTATAAGAGACAGCGGAAGGATCATTACCACACCAAAAACTA10.12224938875305623No Hit
ACGCCCAAGCAGATTTACAACGACCCGGCCAATCTGTTCGTGGCCAGCTT10.12224938875305623No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)