FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi739.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi739.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2624
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA53620.426829268292682No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAA37014.10060975609756No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC34012.957317073170731No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA1144.3445121951219505No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC903.429878048780488No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC873.315548780487805No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTGCTCGTAATCTC582.2103658536585367No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC582.2103658536585367No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA572.1722560975609753No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC521.9817073170731707No Hit
CGGAAGGATCATTACCACATTCCGGCCCACGAGACCAGCAGTGGATGTCT491.8673780487804876No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGACAGCAGTGGATGTCTAG481.8292682926829267No Hit
CGGAAGGATCATTACCACATCTGCAGCAGTGGATGTCTAGGCTCTGTCTC461.753048780487805No Hit
CGGAAGGATCATTACCACCGCAACAGCAGTGGATGTCTAGGCTCTGTCTC431.638719512195122No Hit
CGGAAGGATCATTACCACATCTCCGGCCCACGAGACCAGCAGTGGATGTC421.600609756097561No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA220.8384146341463415No Hit
CGGAAGGATCATTACCACTGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA210.8003048780487805No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT170.6478658536585366No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA120.45731707317073167No Hit
CGGAAGGATCATTACCACATCTCCGGCCCACGAGACCAGCCGTGGATGTC90.3429878048780488No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC70.26676829268292684No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTCCACGTGAACTGTATCAAA60.22865853658536583No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAAAA60.22865853658536583No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACTGTATCAAA50.19054878048780488No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTACCAAA50.19054878048780488No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAGA50.19054878048780488No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTCGGCTCTGTC50.19054878048780488No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGTACCGTATCAAC50.19054878048780488No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATCAAA40.1524390243902439No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA40.1524390243902439No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACTGTATCAAA40.1524390243902439No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC40.1524390243902439No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTCCACGTGAACTGTATCAAA30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC30.11432926829268292No Hit
CGGAATGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTCAAA30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAACTTTTCACGTGAACCGTATCAAAC30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTCCACGTGAACTGTATCAAA30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGCGAACTGTATCAAA30.11432926829268292No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC30.11432926829268292No Hit
CGGAAGGATCATTACCACCTAAAAACTTTTCACGTGAACCGTATCAAACA30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATCAAA30.11432926829268292No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTTAACCGTATCAAA30.11432926829268292No Hit
CGGAAGGATCATTACCACACCTAAGAAACTTCCACGTGAACTGTATCAAA30.11432926829268292No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATCAAAAC30.11432926829268292No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)