FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi735.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi735.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8246
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA247930.06306087800146No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA200824.351200582100414No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT6027.30050933786078No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCGTTGTAA4155.032743148193063No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGCACCGTTGTA3073.723017220470531No Hit
CGGAAGGATCATTACCACACCAAAAAACACTTTCCACGTGAACCGTTGTA1101.3339801115692458No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCTATTAAAC1071.2975988357991752No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGAACCGTTGTAA991.2005821004123212No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA720.8731506184816881No Hit
CGGAAGGATCATTACCACCAAAAAAACTTTCCACGTGAACCGTTGTAATT530.6427358719379093No Hit
CGGAAGGATCATTACCACACCAAAAAAAAACTTTCCACGTGAACCGTTGT430.5214649527043415No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTCCCACGTGAACCGTTGTAA380.4608294930875576No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTGTAAT380.4608294930875576No Hit
CGGAAGGATCATTACCACACCAAAAGAAACTTTCCACGTGAACCGTTGTA270.32743148193063304No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAGCCGTTGTAA250.30317729808391947No Hit
CGGAAGGATCATTACCAAACCAAAAAAAACTTTCCACGTGAACCGTTGTA240.2910502061605627No Hit
CGGAAGGATCATTACCACCAAAAAAAACTTTCCACGTGAACCGTTGTAAT240.2910502061605627No Hit
CGGAAGGATCATTACCACACCAAAAAACACTTTCCACGTGCACCGTTGTA230.2789231142372059No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGACCCGTTGTAA220.26679602231384913No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACTGTCGTTAT210.2546689303904924No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAGCCGTTGTA200.2425418384671356No Hit
CGGAAGGATCATTACCACACCAAAAGAACTTTCCACGTGAACCGTTGTAA190.2304147465437788No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGTAAT180.21828765462042202No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTTAACCGTTGTAA170.20616056269706523No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGGACCGTTGTAA170.20616056269706523No Hit
CGGAAGGATCATTACCACACCAAAAAAAACCTTCCACGTGAACCGTTGTA170.20616056269706523No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTCGTAA160.19403347077370847No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGGACCGTTGTA160.19403347077370847No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACAGTTGTAA150.18190637885035169No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACTGTTGTAA150.18190637885035169No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCGCGTGAACCGTTGTAA140.1697792869269949No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTTAACCGTTGTA140.1697792869269949No Hit
CGGAAGGATCATTACCACACCGAAAAAACTTTCCACGTGAACCGTTGTAA140.1697792869269949No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTCTCCACGTGAACCGTTGTA140.1697792869269949No Hit
CGGAAGGATCATTACCACACCAAAAAGACTTTCCACGTGAACCGTTGTAA140.1697792869269949No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTG120.14552510308028135No Hit
CGGAAGGATCATTACCACACCAAAAAAACCTTCCACGTGAACCGTTGTAA120.14552510308028135No Hit
CGGAAGGATCATTACCACACCAAAGAAACTTTCCACGTGAACCGTTGTAA120.14552510308028135No Hit
CGGAAGGATCATTACCAAACCAAAAAAACTTTCCACGTGAACCGTTGTAA120.14552510308028135No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGCTGTAA120.14552510308028135No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTTCCACGTGAACCGTTGTAA110.13339801115692457No Hit
CGGAAGGATCATTACCACACCAAAGAAAACTTTCCACGTGAACCGTTGTA110.13339801115692457No Hit
CGGAATGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA110.13339801115692457No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAAACGTTGTA110.13339801115692457No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT110.13339801115692457No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACTGTCGTTA110.13339801115692457No Hit
CGGAAGGATTATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA110.13339801115692457No Hit
CGGAAGGATCATTACCACGCCAAAAAAAACTTTCCACGTGAACCGTTGTA100.1212709192335678No Hit
CGGAAGTATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA100.1212709192335678No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCGCGTGAACCGTTGTA100.1212709192335678No Hit
CGGAAGGATAATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA100.1212709192335678No Hit
CGGAAGGATCATTACAACACCAAAAAAACTTTCCACGTGAACCGTTGTAA90.10914382731021101No Hit
CGGAAGGATCATTACCACACCAAAAAAAGCTTTCCACGTGAACCGTTGTA90.10914382731021101No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTCCCACGTGAACCGTTGTA90.10914382731021101No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTTTCCACGTGAACCGTTGTAA90.10914382731021101No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGCAA90.10914382731021101No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCAACGTGAACCGTTGTA90.10914382731021101No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)