FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi733.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi733.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6131
Sequences flagged as poor quality0
Sequence length301
%GC40

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA438571.52177458815854No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA5779.411189039308432No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATTCA1712.789104550644267No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAGCCGTATTCA290.47300603490458326No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA270.44038492904909476No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA260.4240743761213505No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGACCCGTATTCA240.39145327026586196No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACAGTATTCA200.326211058554885No Hit
CGGAAGGATCATTACCACCTAAAAAACTTTCCACGTGAACCGTATTCAAC180.29358995269939653No Hit
CGGAATGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA180.29358995269939653No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTTCCACGTGAACCGTATTCA170.2772793997716523No Hit
CGGAAGGATAATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA170.2772793997716523No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGCGAACCGTATTCA160.26096884684390803No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTTCCACGTGAACCGTATTCA160.26096884684390803No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTACTCA150.24465829391616375No Hit
CGGAAGGATTATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA140.2283477409884195No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGGACCGTATTCA140.2283477409884195No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTTCCACGTGAACCGTATTCA140.2283477409884195No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCAACGTGAACCGTATTCA140.2283477409884195No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTTA130.21203718806067526No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTTAACCGTATTCA130.21203718806067526No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCCA120.19572663513293098No Hit
TGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA120.19572663513293098No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTTCCACGTGAACCGTATTCA110.17941608220518676No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCCACGTGAACCGTATTCA110.17941608220518676No Hit
CGGAAGGATCATTACCACACCCAAAAAACTTTCCACGTGAACCGTATTCA110.17941608220518676No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTTCCACGTGAACCGTATTCA110.17941608220518676No Hit
CGGAAGGATCATTACAACACCTAAAAAACTTTCCACGTGAACCGTATTCA110.17941608220518676No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGCATTCA100.1631055292774425No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGATCCGTATTCA100.1631055292774425No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACCGTATTCA90.14679497634969826No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCATGTGAACCGTATTCA90.14679497634969826No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGAACCGTATTCA90.14679497634969826No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTTCCACGTGAACCGTATTCA90.14679497634969826No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTTCCACGTGAACCGTATTCA90.14679497634969826No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCGCGTGAACCGTATTCA90.14679497634969826No Hit
CTGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA80.13048442342195402No Hit
CGGAAGGATCATTATCACACCTAAAAAACTTTCCACGTGAACCGTATTCA80.13048442342195402No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA80.13048442342195402No Hit
CGGAAGGATCTTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA70.11417387049420975No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTAAACCGTATTCA70.11417387049420975No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTACACGTGAACCGTATTCA70.11417387049420975No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)