FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi724.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi724.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1561
Sequences flagged as poor quality0
Sequence length301
%GC41

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAATGTTCTGT73547.08520179372198No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC16810.762331838565023No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACATGTTCTGT1378.77642536835362No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT935.957719410634208No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT422.690582959641256No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAAATGTTCTGT231.4734144778987828No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAAATGTTCTGTTT181.1531069827033953No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAAATGTTCTGTT120.7687379884689303No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC100.6406149903907752No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACATGTTCTGT100.6406149903907752No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT80.5124919923126201No Hit
CGGAAGGATCATTACCACACCAAAAGAACTTACCACGTGAAATGTTCTGT80.5124919923126201No Hit
CGGAATGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC70.4484304932735426No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTCGGCTCTGTCTCTT70.4484304932735426No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA60.38436899423446513No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT60.38436899423446513No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTGTCAAA60.38436899423446513No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGGAATGTTCTGT50.3203074951953876No Hit
CGGAAGTATCATTACCACACCAAAAAAACTTACCACGTGAAATGTTCTGT50.3203074951953876No Hit
CGGAAGGATCATTACCACACCAAAGAAACTTACCACGTGAAATGTTCTGT50.3203074951953876No Hit
CGGAAGGATCATTACCACACCAAAAAGACTTACCACGTGAAATGTTCTGT40.25624599615631005No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACTGTTCTGT40.25624599615631005No Hit
CGGAAGGATCATTACCACACCAGAAAAACTTACCACGTGAAATGTTCTGT40.25624599615631005No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAGTGTTCTGT40.25624599615631005No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGATATGTTCTGT40.25624599615631005No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAATGTTATGT30.19218449711723257No Hit
CGGAAGGATAATTACCACACCAAAAAAACTTACCACGTGAAATGTTCTGT30.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAGATGTTCTGT30.19218449711723257No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGAAATGTTCTGT30.19218449711723257No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGCTGTCTAGGCTCTGTCTCTT30.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTTACCACGTGAAATGTTCTGT30.19218449711723257No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT30.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCATGTGAAATGTTCTGT30.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTTAAATGTTCTGT30.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAATGTTCTGC30.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAGAAAACTTACCACGTGAAATGTTCTGT30.19218449711723257No Hit
CTGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAATGTTCTGT30.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTTACCACGTGAATCTGTACTT20.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGTAATGTTCTGT20.12812299807815503No Hit
CGTAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAATGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCACAGCAGTTGATGTCTAGGCTCTGTCTCTTATAC20.12812299807815503No Hit
CGGAAGGATCATTACCACAGCAGGGGATGTCTAGGCTCTGTCTCTTATAC20.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACATGAAATGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCACACTAAAAAAACTTACCACGTGAAATGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAACGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCCCTTATAC20.12812299807815503No Hit
TGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACATGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCCCAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC20.12812299807815503No Hit
CGGAAGGATCATTACCCCACCAAAAAAACTTACCACGTGAAATGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGCTCTGTCTCTTATACA20.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGGGAAATGTTCTGT20.12812299807815503No Hit
CGGAATGATCATTACCACACCAAAAAAACTTACCACGTGAAATGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTAAAATGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.12812299807815503No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC20.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACCTACCACGTGAAATGTTCTGT20.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAATGTTCCGT20.12812299807815503No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)