FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi722.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi722.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11860
Sequences flagged as poor quality0
Sequence length301
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA844771.22259696458684No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA11229.460370994940979No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATTCA3142.6475548060708265No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGACCCGTATTCA700.5902192242833052No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA540.45531197301854975No Hit
CGGAAGGATCATTACCACCTAAAAAACTTTCCACGTGAACCGTATTCAAC510.4300168634064081No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTTAACCGTATTCA480.4047217537942664No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAGCCGTATTCA460.387858347386172No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGAACCGTATTCA380.32040472175379425No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGGACCGTATTCA380.32040472175379425No Hit
CGGAATGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA370.31197301854974707No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTACTCA360.30354131534569984No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTTA340.2866779089376054No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA340.2866779089376054No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACAGTATTCA300.25295109612141653No Hit
CTGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA290.24451939291736932No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCGCGTGAACCGTATTCA290.24451939291736932No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTTCCACGTGAACCGTATTCA270.22765598650927488No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTTCCACGTGAACCGTATTCA260.21922428330522764No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCCA250.21079258010118043No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA250.21079258010118043No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTTCCACGTGAACCGTATTCA240.2023608768971332No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGCGAACCGTATTCA220.1854974704890388No Hit
CGGAAGGATAATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA220.1854974704890388No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTTCCACGTGAACCGTATTCA210.17706576728499157No Hit
CGGAAGGATCATTACAACACCTAAAAAACTTTCCACGTGAACCGTATTCA210.17706576728499157No Hit
CGGAAGGATTATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA210.17706576728499157No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACCGTATTCA200.16863406408094433No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTTCCACGTGAACCGTATTCA200.16863406408094433No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCG180.15177065767284992No Hit
CGGAAGGATCATTACCACACCCAAAAAACTTTCCACGTGAACCGTATTCA180.15177065767284992No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGCATTCA170.1433389544688027No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCCACGTGAACCGTATTCA170.1433389544688027No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCAACGTGAACCGTATTCA170.1433389544688027No Hit
TGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA170.1433389544688027No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTTCCACGTGAACCGTATTCA170.1433389544688027No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTTCCACGTGAACCGTATTCA160.13490725126475547No Hit
CGGAAGGATCATACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA160.13490725126475547No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCTACGTGAACCGTATTCA150.12647554806070826No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACATGAACCGTATTCA130.10961214165261382No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTATTCA130.10961214165261382No Hit
CGGAAGGATCATTACCACACCTAAAAATCTTTCCACGTGAACCGTATTCA120.1011804384485666No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGATCCGTATTCA120.1011804384485666No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTGTTCA120.1011804384485666No Hit
CGGAAGGATCATTACTACACCTAAAAAACTTTCCACGTGAACCGTATTCA120.1011804384485666No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)