FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi721.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi721.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10710
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC326530.485527544351076No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT318129.70121381886088No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT10589.878618113912232No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTAAGC6135.723622782446312No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT960.8963585434173669No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA950.8870214752567693No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC880.8216619981325864No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTTAAGC810.7563025210084033No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA500.4668534080298786No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA480.44817927170868344No Hit
CGGAAGGATCATTACCACCCCAAAAACTATCCACGAGAACCACTTTGTAT360.33613445378151263No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC350.32679738562091504No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACTGTCGTTAT340.31746031746031744No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT290.2707749766573296No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC280.261437908496732No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGAACCGTTAAGC260.24276377217553688No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG260.24276377217553688No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT230.21475256769374418No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT220.2054154995331466No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC220.2054154995331466No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC210.19607843137254902No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC200.18674136321195145No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA190.17740429505135388No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTCTGTAT190.17740429505135388No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT180.16806722689075632No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC170.15873015873015872No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC170.15873015873015872No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACTGTTTGTAT170.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT170.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGACCCGTTAAGC150.1400560224089636No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT150.1400560224089636No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACTGTCGTTAT150.1400560224089636No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCACTTTGTA150.1400560224089636No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT140.130718954248366No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT140.130718954248366No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT140.130718954248366No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTTAAGC140.130718954248366No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC140.130718954248366No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC140.130718954248366No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT130.12138188608776844No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC130.12138188608776844No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT120.11204481792717086No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC120.11204481792717086No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC120.11204481792717086No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC120.11204481792717086No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA120.11204481792717086No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT120.11204481792717086No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACC110.1027077497665733No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC110.1027077497665733No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC110.1027077497665733No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCATTTTGTAT110.1027077497665733No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTGT110.1027077497665733No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC110.1027077497665733No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC110.1027077497665733No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)