FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi717.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi717.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2195
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT37917.266514806378133No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC33815.398633257403189No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA27112.34624145785877No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT2039.248291571753986No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC1396.33257403189066No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT914.145785876993166No Hit
CGGAAGGATCATTACCACATCTCCGAGCCACGAGACCAGCAGTGGATGTC904.100227790432802No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT743.37129840546697No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC703.189066059225513No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT522.369020501138952No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTATATA180.8200455580865604No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTTT170.7744874715261959No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTT160.7289293849658315No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA120.5466970387243736No Hit
CGGAAGGATCATTACCACATCTCCGAGCCACGAGACCAGCCGTGGATGTC100.45558086560364464No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT80.36446469248291574No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTC80.36446469248291574No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA70.31890660592255127No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC70.31890660592255127No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTTTC50.22779043280182232No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTACCACGTGAATCTGTACTT40.18223234624145787No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC40.18223234624145787No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA40.18223234624145787No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC40.18223234624145787No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA30.1366742596810934No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTACCACGTGAATCTGTACT30.1366742596810934No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC30.1366742596810934No Hit
CGGAAGGATCATTACCCCACCAAAAAAACTTACCACGTGAATCTGTACTT30.1366742596810934No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTAGTTAT30.1366742596810934No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC30.1366742596810934No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.1366742596810934No Hit
CGGAAGGATCATACCACACCAAAAAACTATCCACGTGAACCGTTACATAC30.1366742596810934No Hit
CGGAAGGATCATTACCACACTAAAAAAACTTACCACGTGAATCTGTACTT30.1366742596810934No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGCTACATA30.1366742596810934No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACTCTGTACTT30.1366742596810934No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTATCAAC30.1366742596810934No Hit
CGGAAGGATCATTACCACGAAACCAGCAGTGGATGTCTAGGCTCTGTCTC30.1366742596810934No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)