FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi714.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi714.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14199
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA922364.9552785407423No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC191913.51503627015987No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA2982.098739347841397No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA1000.7042749489400663No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA550.3873512219170364No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA550.3873512219170364No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA520.3662229734488344No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC500.35213747447003313No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA470.33100922600183114No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA470.33100922600183114No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG450.3169237270230298No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA420.2957954785548278No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA400.2817099795760265No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTATCAA370.2605817311078245No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA360.2535389816184238No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAA350.24649623212902316No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAA350.24649623212902316No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAA340.23945348263962252No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA340.23945348263962252No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA330.23241073315022187No Hit
CGGAAGGATCATTACCACGGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA320.22536798366082117No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA310.21832523417142052No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA310.21832523417142052No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGA300.21128248468201988No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA290.20423973519261918No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAA290.20423973519261918No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAA280.19719698570321853No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC280.19719698570321853No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA280.19719698570321853No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA270.19015423621381788No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAA260.1831114867244172No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAA250.17606873723501656No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA250.17606873723501656No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA240.1690259877456159No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA240.1690259877456159No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA230.16198323825621522No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAA220.15494048876681457No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAA210.1478977392774139No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATATCAAA200.14085498978801325No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAA180.1267694908092119No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAA170.11972674131981126No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAA160.11268399183041058No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA160.11268399183041058No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCATGTGAACCGTATCAAA150.10564124234100994No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCTACGTGAACCGTATCAAA150.10564124234100994No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)