FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi712.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi712.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5413
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA266149.15943099944578No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT59811.047478292998338No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA3596.632181784592647No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA1051.9397746166635876No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGTAACGAGATCTC751.3855532976168483No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC741.3670792536486236No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA671.2377609458710512No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC671.2377609458710512No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTCCACGTGAACTGTATCAAA621.1453907260299279No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT510.9421762423794569No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT500.9237021984112322No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCGTTGTAA440.8128579346018844No Hit
CGGAAGGATCATTACCACGAGAACAGCAGTGGATGTCTAGGCTCTGTCTC380.7020136707925365No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAAAA360.6650655828560872No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT310.5726953630149639No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATCAAAAC230.42490301126916685No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATCAAA190.35100683539626826No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAA190.35100683539626826No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTACCAAA170.31405874745981893No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAG160.2955847034915943No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTCTGTA160.2955847034915943No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTATCAA140.25863661555514506No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTCCACGTGAACTGTATCAAA140.25863661555514506No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGCGAACTGTATCAAA130.2401625715869204No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAA120.22168852761869576No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGAACCGTTGTAA120.22168852761869576No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTCCACGTGAACTGTATCAAA110.2032144836504711No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCCCACGTGAACTGTATCAAA110.2032144836504711No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTCCACGTGAACTGTATCAAA100.18474043968224643No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTCCACGTGAACTGTATCAAA100.18474043968224643No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTCCACGTGAACTGTATCAAA100.18474043968224643No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGCGAACCGTCAGAAAT100.18474043968224643No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATCAAA100.18474043968224643No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATAAAA100.18474043968224643No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAC90.1662663957140218No Hit
CGGAAGGATAATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA90.1662663957140218No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA90.1662663957140218No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAGCTGTATCAAA90.1662663957140218No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCGAA90.1662663957140218No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAGA80.14779235174579716No Hit
CGGAATGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA70.12931830777757253No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTGTAAT70.12931830777757253No Hit
CTGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA70.12931830777757253No Hit
CGGAAGGATTATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA70.12931830777757253No Hit
CGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAAA70.12931830777757253No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGTACCGAGATCTC60.11084426380934788No Hit
CGGAAGGATCATTACCACACCCAAAAAACTTCCACGTGAACTGTATCAAA60.11084426380934788No Hit
CGGAAGGATCATTACCAAACCAAAAACAATCCACGTGAACCGTCAGAAAT60.11084426380934788No Hit
CGGAAGGATCATTACTACACCTAAAAAACTTCCACGTGAACTGTATCAAA60.11084426380934788No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCGCGTGAACTGTATCAAA60.11084426380934788No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTCCACGTGAACTGTATCAAA60.11084426380934788No Hit
CGGAAGGATCATTACCACACCTGAAAAACTTCCACGTGAACTGTATCAAA60.11084426380934788No Hit
CGGAAGGATCATTACCACCAAAAACAATCCACGTGAACCGTCAGAAATAG60.11084426380934788No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAGCCGTCAGAAAT60.11084426380934788No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)