FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi710.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi710.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5206
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA279553.68805224740684No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC118222.704571648098348No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA1222.3434498655397618No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGCTAACCAA390.749135612754514No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA300.5762581636573185No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTATCAACA280.5378409527468306No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAGCCGTTAACCAA250.48021513638109875No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTAGGCTCTGTCTCTT240.46100653092585475No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGGACCGTTAACCAA210.4033807145601229No Hit
CGGAAGGATCATTACCACCTAAAACTATCCACGTGAACCGTTAACCAAAC200.384172109104879No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC190.36496350364963503No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA180.3457548981943911No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTTAACCGTTAACCAA170.32654629273914715No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA160.3073376872839032No Hit
CGGAAGTATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA150.28812908182865926No Hit
CGGAAGGATCATTACCACACCTAAAGCTATCCACGTGAACCGTTAACCAA120.23050326546292738No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCGCGTGAACCGTTAACCAA120.23050326546292738No Hit
CGGAATGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA120.23050326546292738No Hit
CGGAAGGATTATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA110.21129466000768343No Hit
CGGAAGGATCATTACCACACCTAAAACTACCCACGTGAACCGTTAACCAA110.21129466000768343No Hit
CTGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA110.21129466000768343No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCATGTGAACCGTTAACCAA110.21129466000768343No Hit
CGGAAGGATCATTACCACGCCTAAAACTATCCACGTGAACCGTTAACCAA110.21129466000768343No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC110.21129466000768343No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACAGTTAACCAA110.21129466000768343No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAACCA100.1920860545524395No Hit
CGGAAGGATAATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA100.1920860545524395No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC100.1920860545524395No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTCAACCAA100.1920860545524395No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAGCCAA100.1920860545524395No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACAAA90.17287744909719555No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC90.17287744909719555No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGCGAACCGTTAACCAA80.1536688436419516No Hit
CGGAAGGATCATTACCACACATAAAACTATCCACGTGAACCGTTAACCAA80.1536688436419516No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC80.1536688436419516No Hit
CGGAAGGATCATTACCACACCTAGAACTATCCACGTGAACCGTTAACCAA70.13446023818670766No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAG70.13446023818670766No Hit
CGGAAGGATCATTACCACCGGCAGCAGTGGATGTCTAGGCTCTGTCTCTT70.13446023818670766No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTAAACCGTTAACCAA70.13446023818670766No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.13446023818670766No Hit
CGGAAGGATCATTACCAAACCTAAAACTATCCACGTGAACCGTTAACCAA70.13446023818670766No Hit
CGGAAGGATCATTACCACACCTAAGACTATCCACGTGAACCGTTAACCAA70.13446023818670766No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC60.11525163273146369No Hit
CGGAAGGATCATTACCACACCTAAAACTGTCCACGTGAACCGTTAACCAA60.11525163273146369No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA60.11525163273146369No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC60.11525163273146369No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACTGTTAACCAA60.11525163273146369No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC60.11525163273146369No Hit
CGGAAGGATCATTACCACACCTGAAACTATCCACGTGAACCGTTAACCAA60.11525163273146369No Hit
CGGAAGGATCATTACCACACCTAAAACTATCAACGTGAACCGTTAACCAA60.11525163273146369No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)