FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi709.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi709.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7795
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA220628.30019243104554No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC154619.83322642719692No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG139017.831943553559974No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTCATTA2403.078896728672226No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTG2142.745349583066068No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA1702.1808851828094933No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA1121.436818473380372No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGTAACGAGATCTC811.0391276459268761No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCGAGACAGCAGTGGATGTCT540.6927517639512508No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC460.59012187299551No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTG460.59012187299551No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCTGTCATTA280.359204618345093No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA270.3463758819756254No Hit
CGGAAGGATCATTACCACTCGGCAGCAGTGGATGTCTAGGCTCTGTCTCT250.3207184092366902No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCAAGTGAACCGTATCAAC230.295060936497755No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTGT230.295060936497755No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA210.26940346375881974No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA190.24374599101988453No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTGTT150.19243104554201412No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA150.19243104554201412No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC140.1796023091725465No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC140.1796023091725465No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC130.1667735728030789No Hit
CGGAAGGATCATTACCACACCAAAAAGACTTACCACGTGAATCTGTACTG120.1539448364336113No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA120.1539448364336113No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC120.1539448364336113No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA120.1539448364336113No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACACCAGCAGTGGAT120.1539448364336113No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACTGTCATTA120.1539448364336113No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA120.1539448364336113No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA110.14111610006414368No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAA110.14111610006414368No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA110.14111610006414368No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA110.14111610006414368No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC110.14111610006414368No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC100.12828736369467605No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA100.12828736369467605No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCTGTACTGT100.12828736369467605No Hit
CGGAAGGATCATTACCACACCTAAAAACTTACCACGTGAATCTGTACTGT100.12828736369467605No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA100.12828736369467605No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTCAAAA100.12828736369467605No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC90.11545862732520845No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC90.11545862732520845No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC90.11545862732520845No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACTCTGTACTG90.11545862732520845No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTTAATCTGTACTG90.11545862732520845No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGTACCGAGATCTC80.10262989095574088No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAA80.10262989095574088No Hit
CGGAAGTATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG80.10262989095574088No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA80.10262989095574088No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA80.10262989095574088No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA80.10262989095574088No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGGATCTGTACTG80.10262989095574088No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)