FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi705.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi705.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2286
Sequences flagged as poor quality0
Sequence length301
%GC43

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT66228.9588801399825No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC59425.984251968503933No Hit
CGGAAGGATCATTACCACACCAAAACCTTTCCACGTGAACCGTTCCGTCT23810.411198600174979No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT1034.505686789151356No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT893.89326334208224No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA833.63079615048119No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTT311.3560804899387575No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA220.9623797025371827No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA180.7874015748031495No Hit
CGGAAGGATCATTACCACACCGTATTTTTCCTTCCTCCCGTGAACTGTTT150.6561679790026247No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTTT130.5686789151356081No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTTTC100.4374453193350831No Hit
CGGAAGGATCATTACCACGCCAAAACCTTTCCACGTGAACCGTTCCGTCT90.39370078740157477No Hit
CGGAAGGATCATTACCACACCAAGAAAACTTACCACGTGAATCTGTACTT70.30621172353455817No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC60.26246719160104987No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC60.26246719160104987No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTCCGTC60.26246719160104987No Hit
CGGAAGGATTATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT50.21872265966754156No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTATCAACC50.21872265966754156No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC50.21872265966754156No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCCGTACTT40.17497812773403326No Hit
CGGAAGGATCATTACCACATCGTCGGCCGCAGTGGATGTCTAGGCTCTGT40.17497812773403326No Hit
CGGAAGGATCATTACCACACCGAAAAAACTTACCACGTGAATCTGTACTT40.17497812773403326No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCGTTCCGT40.17497812773403326No Hit
CGGAAGGATCATTACCAAACCAAAAAAACTTACCACGTGAATCTGTACTT40.17497812773403326No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGGATCTGTACTT40.17497812773403326No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTTACCACGTGAATCTGTACTT30.13123359580052493No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTGCTT30.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC30.13123359580052493No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCCGTGGATGTCTAGGCTCTGT30.13123359580052493No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGCGAATCTGTACTT30.13123359580052493No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGAATCTGTACTT30.13123359580052493No Hit
CGGAAGGATCATTACCACACCAAAACCTTTCCACGTGAACCGTATCAACC30.13123359580052493No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGATTCTGTACTT30.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAACTTACCACGTGAATCTGTACTTT30.13123359580052493No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.13123359580052493No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACCT30.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC30.13123359580052493No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC30.13123359580052493No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTCCGTCT30.13123359580052493No Hit
CGGAAGGATCATTACCACACCGTCGGCAGCAGTGGATGTCTAGGCTCTGT30.13123359580052493No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)