FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi704.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi704.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4762
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC196841.32717345653087No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA144330.30239395212096No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT801.6799664006719865No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA711.490970180596388No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC701.4699706005879882No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT440.9239815203695927No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAAAA360.7559848803023939No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA280.5879882402351954No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTCCACGTGAACTGTATCAAA280.5879882402351954No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC260.5459890802183957No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTCCACGTGAACTGTATCAAAA220.46199076018479635No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC220.46199076018479635No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC170.3569928601427972No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC140.2939941201175977No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC130.2729945401091978No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC130.2729945401091978No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATCAAAAC130.2729945401091978No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC120.251994960100798No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC110.23099538009239817No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC110.23099538009239817No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC110.23099538009239817No Hit
CGGAATGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA100.20999580008399832No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC100.20999580008399832No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC100.20999580008399832No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC100.20999580008399832No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC90.18899622007559846No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC90.18899622007559846No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAGCTGTATCAAA90.18899622007559846No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA90.18899622007559846No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCGAA90.18899622007559846No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATCAAA80.16799664006719867No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC80.16799664006719867No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAC80.16799664006719867No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC80.16799664006719867No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC80.16799664006719867No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCCCACGTGAACTGTATCAAA80.16799664006719867No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC70.14699706005879884No Hit
CGGAAGGATTATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA70.14699706005879884No Hit
CGGAAGGATCATTACCACACCTAAGAAACTTCCACGTGAACTGTATCAAA70.14699706005879884No Hit
CGGAAGGATCATTACCACATCTAAAAACTTTCCACGTGAACCGTATCAAC60.125997480050399No Hit
CGGAAGGATCATTACCCCACCTAAAAAACTTCCACGTGAACTGTATCAAA60.125997480050399No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC60.125997480050399No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTCCACGTGAACTGTATCAAA60.125997480050399No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA60.125997480050399No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC60.125997480050399No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.125997480050399No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCATGTGAACTGTATCAAA60.125997480050399No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCAACGTGAACTGTATCAAA60.125997480050399No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.125997480050399No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC60.125997480050399No Hit
CGGAAGGATCATTACAACACCTAAAAAACTTCCACGTGAACTGTATCAAA50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTCCACGTGAACTGTATCAAA50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTACCAAA50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAGA50.10499790004199916No Hit
CGGAAGGATCATTACTACACCTAAAAAACTTCCACGTGAACTGTATCAAA50.10499790004199916No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGCATCAAA50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATCAAA50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATAAAA50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC50.10499790004199916No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA50.10499790004199916No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)