FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi703.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi703.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8854
Sequences flagged as poor quality0
Sequence length301
%GC45

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA171719.39236503275356No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT139215.721707702733228No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT98011.06844364129207No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA8699.814772983962051No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA3824.3144341540546645No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC2833.196295459679241No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA2522.8461712220465327No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTACAAT2342.6428732776146378No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGAACCGTCAAAA800.903546419697312No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTCAAAA800.903546419697312No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTACAAT780.8809577592048791No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC780.8809577592048791No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT620.7002484752654168No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAAAA590.6663654845267676No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCAGTGAACCGTTAAACAA540.6098938332956856No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGACCCGTTAAGC460.5195391913259544No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGACCCGTCAAAA450.508244861079738No Hit
CGGAAGGATCATTACCACACCAGCAGTGGATGTCTAGGCTCTGTCTCTTA420.47436187034108873No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCACTTTGT410.4630675400948724No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTAAAC330.3727128981251412No Hit
CGGAAGGATCATTACCACCAAAAAAACTATCCACGTGAACCGTCAAAAAA260.2936525864016264No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAGAA250.28235825615541No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCACTTTGTA240.2710639259091936No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA240.2710639259091936No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT180.20329794443189517No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTAAGC170.1920036141856788No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGCGAATTGTTACAATA170.1920036141856788No Hit
CGGAAGGATCATTACCACACCTAAAAACCTATCCACGTGAACCGTTAAGC170.1920036141856788No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC150.169414953693246No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGAACCGTTAAGC140.1581206234470296No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTACAT130.1468262932008132No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT130.1468262932008132No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGACCCGTCAAAA130.1468262932008132No Hit
CGGAAGTATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA130.1468262932008132No Hit
CGGAAGGATCATTACCACACCAAAAACAATCTACGTGAACCGTCAGAAAT120.1355319629545968No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT120.1355319629545968No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT120.1355319629545968No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTCAAAAAA120.1355319629545968No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTATCCACGTGAACCGTCAAAA110.1242376327083804No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACAGTCAAAA110.1242376327083804No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCTATACCG100.112943302462164No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGGACCGTCAGAAAT100.112943302462164No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCACTTTGTAT100.112943302462164No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAGCCGTCAAAA100.112943302462164No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT100.112943302462164No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT100.112943302462164No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT100.112943302462164No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGCGAACCGTCAAAA90.10164897221594758No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAG90.10164897221594758No Hit
CGGAAGGATCATTACCACCAAAAACAATCCACGTGAACCGTCAGAAATAG90.10164897221594758No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGGACCGTCAAAA90.10164897221594758No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTTAACCGTCAAAA90.10164897221594758No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)