FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi701.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi701.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7781
Sequences flagged as poor quality0
Sequence length301
%GC45

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC382149.1067986120036No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTATCAA159620.511502377586428No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGACCTGTATCAA2172.788844621513944No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA1982.54466006939982No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT961.233774579102943No Hit
CGGAAGGATCATTACCACACCTAAAAACACTTCCACGTGAACTGTATCAA881.1309600308443646No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTACAAT801.0281454825857859No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCTATACCG590.7582572934070171No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC400.5140727412928929No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC350.44981364863128137No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC290.3727027374373474No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC290.3727027374373474No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA290.3727027374373474No Hit
CGGAAGGATCATTACCACACCCAAAAAAACTTCCACGTGAACTGTATCAA260.3341472818403804No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC250.3212954633080581No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC230.29559182624341346No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC220.28274000771109115No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC220.28274000771109115No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC210.26988818917876883No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACC190.24418455211412415No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTCCCACGTGAACTGTATCAA190.24418455211412415No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC180.23133273358180184No Hit
CGGAAGGATCATTACCACACCTAAAAACACTTCCACGTGACCTGTATCAA180.23133273358180184No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC170.21848091504947947No Hit
CGGAAGGATCATTACCACCTAAAAAAACTTCCACGTGAACTGTATCAAAA170.21848091504947947No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC170.21848091504947947No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA170.21848091504947947No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC160.20562909651715716No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC160.20562909651715716No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC150.19277727798483485No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC150.19277727798483485No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC150.19277727798483485No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC140.1799254594525125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC140.1799254594525125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC130.1670736409201902No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC130.1670736409201902No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA120.15422182238786789No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC120.15422182238786789No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC120.15422182238786789No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC120.15422182238786789No Hit
CGGAATGATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTATCAA110.14137000385554557No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC110.14137000385554557No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC110.14137000385554557No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGGACTGTATCAA110.14137000385554557No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC100.12851818532322323No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCTATACCG100.12851818532322323No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC100.12851818532322323No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC90.11566636679090092No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTTAACTGTATCAA90.11566636679090092No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC90.11566636679090092No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC80.10281454825857858No Hit
CGGAAGTATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTATCAA80.10281454825857858No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC80.10281454825857858No Hit
CTGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTATCAA80.10281454825857858No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTACCAA80.10281454825857858No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAAAA80.10281454825857858No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC80.10281454825857858No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC80.10281454825857858No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)