FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi699.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi699.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10973
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC720365.64294176615329No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA142112.949968103526837No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA3092.8160029162489746No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC460.41921079012120666No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC460.41921079012120666No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC430.3918709559828671No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA380.3463045657523011No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC380.3463045657523011No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC350.31896473161396155No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC350.31896473161396155No Hit
CGGAAGGATCATTACCACCCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT350.31896473161396155No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC350.31896473161396155No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC330.30073817552173515No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC330.30073817552173515No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC320.291624897475622No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATGAAC280.25517178529116924No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA280.25517178529116924No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC260.23694522919894284No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC260.23694522919894284No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC250.22783195115282967No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC250.22783195115282967No Hit
CGGAAGGATCATTACCACGTCGTCGTCAGCAGTGGATGTCTAGGCTCTGT250.22783195115282967No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC240.2187186731067165No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC240.2187186731067165No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC230.20960539506060333No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC220.2004921170144901No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAC210.19137883896837693No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCTACGTGAACCGTATCAAC210.19137883896837693No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC210.19137883896837693No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC200.18226556092226376No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC190.17315228287615056No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC190.17315228287615056No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC170.15492572678392416No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC170.15492572678392416No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC160.145812448737811No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC160.145812448737811No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC160.145812448737811No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAA160.145812448737811No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC160.145812448737811No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA150.1366991706916978No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA150.1366991706916978No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC150.1366991706916978No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC130.11847261459947142No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC130.11847261459947142No Hit
CGGAAGGATCATTACCACACCTGAAAACTTTCCACGTGAACCGTATCAAC130.11847261459947142No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC130.11847261459947142No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA120.10935933655335825No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTATCAAC120.10935933655335825No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA120.10935933655335825No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAAAA120.10935933655335825No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACATGAACCGTATCAAC120.10935933655335825No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCATGTGAACCGTATCAAC110.10024605850724505No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA110.10024605850724505No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATATCAAC110.10024605850724505No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)