FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi698.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi698.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5118
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA369772.23524814380617No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA771.5044939429464634No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC751.4654161781946073No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT681.3286440015631107No Hit
CGGAAGGATCATTACCACTCCAGCAGTGGATGTCTAGGCTCTGTCTCTTA641.2504884720593983No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC531.0355607659241892No Hit
CGGAAGGATCATTACCACGTCGTCGTCAGCAGTGGATGTCTAGGCTCTGT510.996483001172333No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC360.7033997655334115No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA250.48847205939820243No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA240.4689331770222743No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA220.4298554122704181No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAA220.4298554122704181No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA210.4103165298944901No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA190.3712387651426338No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA190.3712387651426338No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC180.3516998827667058No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA180.3516998827667058No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG180.3516998827667058No Hit
CGGAAGGATCATTACCACACCTGAAAACTTTCCACGTGAACCGTATCAAA180.3516998827667058No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA160.31262211801484957No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA160.31262211801484957No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA150.29308323563892147No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAA140.2735443532629933No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAA140.2735443532629933No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA130.25400547088706527No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAA130.25400547088706527No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC130.25400547088706527No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA120.23446658851113714No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAA110.21492770613520906No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAA110.21492770613520906No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA110.21492770613520906No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC110.21492770613520906No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAA110.21492770613520906No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA110.21492770613520906No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA100.19538882375928096No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA100.19538882375928096No Hit
CGGAAGGATCATTACCCCACCTAAAAACTTTCCACGTGAACCGTATCAAA100.19538882375928096No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAA100.19538882375928096No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA100.19538882375928096No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAAAC90.1758499413833529No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA90.1758499413833529No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAA90.1758499413833529No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAA90.1758499413833529No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA80.15631105900742479No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAA80.15631105900742479No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA80.15631105900742479No Hit
CAGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA70.13677217663149666No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA70.13677217663149666No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGTACCGTATCAAA70.13677217663149666No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA70.13677217663149666No Hit
CGGAAGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAAC70.13677217663149666No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACATGAACCGTATCAAA70.13677217663149666No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAA60.11723329425556857No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGA60.11723329425556857No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA60.11723329425556857No Hit
CGGAAGGATCATTACCACACCTAAAACCTTTCCACGTGAACCGTATCAAA60.11723329425556857No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAA60.11723329425556857No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCTACGTGAACCGTATCAAA60.11723329425556857No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)