FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi693.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi693.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7419
Sequences flagged as poor quality0
Sequence length301
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA492666.39708855640922No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA6959.367839331446287No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATTCA2092.817091252190322No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTTCACGTGAACCTGTTCTG650.8761288583367031No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGACCCGTATTCA460.6200296535921284No Hit
CGGAAGGATCATTACCACCTAAAAAACTTTCCACGTGAACCGTATTCAAC420.5661140315406389No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTTAACCGTATTCA340.4582827874376601No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGGACCGTATTCA320.4313249764119153No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC320.4313249764119153No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA290.39088825987329834No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA290.39088825987329834No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTACTCA270.3639304488475536No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGAACCGTATTCA250.33697263782180886No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGCGAACCGTATTCA250.33697263782180886No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAGCCGTATTCA230.3100148267960642No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTTCCACGTGAACCGTATTCA220.29653592128319184No Hit
CGGAATGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA210.28305701577031944No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCG210.28305701577031944No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTTA180.2426202992317024No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTTCCACGTGAACCGTATTCA180.2426202992317024No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTTCCACGTGAACCGTATTCA170.22914139371883005No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTATCAA170.22914139371883005No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTTCCACGTGAACCGTATTCA170.22914139371883005No Hit
CGGAAGGATTATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA170.22914139371883005No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACAGTATTCA150.20218358269308534No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCCACGTGAACCGTATTCA150.20218358269308534No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGATCCGTATTCA150.20218358269308534No Hit
CGGAAGGATCATTACAACACCTAAAAAACTTTCCACGTGAACCGTATTCA140.18870467718021297No Hit
TGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA140.18870467718021297No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCGCGTGAACCGTATTCA140.18870467718021297No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTTCCACGTGAACCGTATTCA130.1752257716673406No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTACACGTGAACCGTATTCA130.1752257716673406No Hit
CGGAAGGATAATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA130.1752257716673406No Hit
CTGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA120.16174686615446826No Hit
CGGAAGGATCATTACCACACCTAAGAAACTTTCCACGTGAACCGTATTCA120.16174686615446826No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTGTTCA120.16174686615446826No Hit
CGGAAGGATCATTACCACACCTGAAAAACTTTCCACGTGAACCGTATTCA120.16174686615446826No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTTCCACGTGAACCGTATTCA120.16174686615446826No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTTCCACGTGAACCGTATTCA120.16174686615446826No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTATTCA120.16174686615446826No Hit
GGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA110.14826796064159592No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACCGTATTCA100.13478905512872355No Hit
CGGAAGGATCATTATCACACCTAAAAAACTTTCCACGTGAACCGTATTCA100.13478905512872355No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCATGTGAACCGTATTCA100.13478905512872355No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAATCGTATTCA100.13478905512872355No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTAAACCGTATTCA100.13478905512872355No Hit
CGTAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA100.13478905512872355No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTTCACGTGACCCTGTTCTG100.13478905512872355No Hit
CGGAAGGATCATTACCACACCCAAAAAACTTTCCACGTGAACCGTATTCA100.13478905512872355No Hit
CGGAAGGATCATTACCACACCTAAAAATCTTTCCACGTGAACCGTATTCA90.1213101496158512No Hit
CGGAAGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA90.1213101496158512No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCCA90.1213101496158512No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA90.1213101496158512No Hit
CGGAAGGATCTTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA80.10783124410297883No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCTTATTCA80.10783124410297883No Hit
CGGAAGGTCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA80.10783124410297883No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)