FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi692.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi692.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1363
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA71452.384446074834926No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC22316.36096845194424No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA765.575935436537051No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC221.6140865737344092No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGTAAA201.467351430667645No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT191.3939838591342628No Hit
CGGAAGGATCATTACCACACCTAATAAACTATCCACGTGAACCGTCAAAA100.7336757153338225No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTATCAAC90.6603081438004402No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT90.6603081438004402No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA90.6603081438004402No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC80.586940572267058No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAAACA60.4402054292002935No Hit
CGGAAGGATAATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA50.36683785766691124No Hit
CGGAAGGATCATTACCACACCATAAAACTATCCACGTGAACCGTTAAACA50.36683785766691124No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAGCCGTTGTAAA50.36683785766691124No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTGTAAA40.293470286133529No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTAAACA40.293470286133529No Hit
CGGAAGGATCATTACCACACCATAAAACCTTCCACGTGAACCGTTGTAAA40.293470286133529No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.293470286133529No Hit
CGGAAGGATCATTACAACACCATAAAACTTTCCACGTGAACCGTTGTAAA30.22010271460014674No Hit
CGGAAGGATCATTACCACACCATAAAGCTTTCCACGTGAACCGTTGTAAA30.22010271460014674No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGGACCGTTGTAAA30.22010271460014674No Hit
CGGAAGGATTATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA30.22010271460014674No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTGAA30.22010271460014674No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTAAACA30.22010271460014674No Hit
CGGAAGGATCATTACCACCATAAAACTTTCCACGTGAACCGTTGTAAATA30.22010271460014674No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC30.22010271460014674No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAGA30.22010271460014674No Hit
CGGAAGGATCATTACCACACCATAGAACTTTCCACGTGAACCGTTGTAAA30.22010271460014674No Hit
CTGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA30.22010271460014674No Hit
CGGAAGGATCATTACCACACCATAAAACTCTCCACGTGAACCGTTGTAAA30.22010271460014674No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAT30.22010271460014674No Hit
CGGAAGGATCATTACCACACCATAAAAATTTCCACGTGAACCGTTGTAAA30.22010271460014674No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA20.1467351430667645No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA20.1467351430667645No Hit
CGGAATGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA20.1467351430667645No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTATAAA20.1467351430667645No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1467351430667645No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.1467351430667645No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTTAACCGTTAAACA20.1467351430667645No Hit
CGGAAGGATCATTACCACACCAGAAAACTTTCCACGTGAACCGTTGTAAA20.1467351430667645No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.1467351430667645No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGCTGTAAA20.1467351430667645No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC20.1467351430667645No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1467351430667645No Hit
CGGAAGGAGCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA20.1467351430667645No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTTAACCGTTGTAAA20.1467351430667645No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTATCAAC20.1467351430667645No Hit
CGGAAGGATCATTACCACACCATAAACTTTCCACGTGAACCGTTGTAAAT20.1467351430667645No Hit
CGGAAGGATCATTACCACACCATAAGACTTTCCACGTGAACCGTTGTAAA20.1467351430667645No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)