FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi685.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi685.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15733
Sequences flagged as poor quality0
Sequence length301
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA1219877.53130362931418No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA1270.8072204919595755No Hit
CGGAAGGATCATTACCACCAAAAAACTATCCACGTGAACCGTTAAACAAG900.5720460179241086No Hit
CGGAAGGATCATTACCACGCCAAAAAACTATCCACGTGAACCGTTAAACA820.5211974829975211No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGCGAACCGTTAAACA810.5148414161316976No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA800.5084853492658743No Hit
CGGAAGGATCATTACCACACCAAAAAGCTATCCACGTGAACCGTTAAACA690.4385686137418166No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA680.43221254687599314No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGGACCGTTAAACA670.4258564800101697No Hit
CGGAAGGATCATTACCACACCAAAAGACTATCCACGTGAACCGTTAAACA660.4195004131443463No Hit
CGGAAGGATCATTACCACTCCAGCAGTGGATGTCTAGGCTCTGTCTCTTA660.4195004131443463No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTTAACCGTTAAACA640.4067882794126994No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAGCCGTTAAACA630.400432212546876No Hit
CGGAAGGATCATTACCACACCAAAAAACTACCCACGTGAACCGTTAAACA610.38772007881522913No Hit
CGGAAGGATCATTACCACACCAAGAAACTATCCACGTGAACCGTTAAACA590.37500794508358226No Hit
CGGAATGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA590.37500794508358226No Hit
CGGAAGTATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA580.36865187821775885No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA540.3432276107544651No Hit
CGGAAGGATCATTACCACACCAAAGAACTATCCACGTGAACCGTTAAACA530.3368715438886417No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACG480.30509120955952457No Hit
CGGAAGGATCATTACCACACCAGAAAACTATCCACGTGAACCGTTAAACA470.29873514269370116No Hit
CGGAAGGATCATTACCACCAAAAAACTATCCACGTGAACCGTTAAACAAA460.2923790758278777No Hit
CGGAAGGATCATTACCACACCAAAAAACTGTCCACGTGAACCGTTAAACA430.2733108752304074No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTGAACA430.2733108752304074No Hit
CGGAAGGATCATTACCACACAAAAAAACTATCCACGTGAACCGTTAAACA410.26059874149876056No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACAGTTAAACA400.25424267463293715No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCGCGTGAACCGTTAAACA380.24153054090129028No Hit
CGGAAGGATCATTACCACACCGAAAAACTATCCACGTGAACCGTTAAACA360.22881840716964344No Hit
CGGAAGGATCATTACCAAACCAAAAAACTATCCACGTGAACCGTTAAACA350.22246234030381998No Hit
CGGAAGGATAATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA350.22246234030381998No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAGACA350.22246234030381998No Hit
CGGAAGGATCATTACCACACCAAAAAACCATCCACGTGAACCGTTAAACA320.2033941397063497No Hit
CGGAAGGATCATTACCACACCCGGGATCCACGATCTTGCTCCTAGGTTAA320.2033941397063497No Hit
CGGAAGGATCATTACAACACCAAAAAACTATCCACGTGAACCGTTAAACA310.19703807284052627No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGCTAAACA310.19703807284052627No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA300.19068200597470286No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCAACGTGAACCGTTAAACA270.17161380537723256No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCGACGTGAACCGTTAAACA270.17161380537723256No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAACA270.17161380537723256No Hit
CTGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA260.16525773851140912No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAATA260.16525773851140912No Hit
CGGAAGGATCATTACCACACCAAAAAAATATCCACGTGAACCGTTAAACA250.15890167164558572No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCATTAAACA230.14618953791393885No Hit
CGGAAGGATTATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA220.13983347104811544No Hit
CGGAAGGATCATTATCACACCAAAAAACTATCCACGTGAACCGTTAAACA220.13983347104811544No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT210.133477404182292No Hit
CGGAAGGATCATTACCCCACCAAAAAACTATCCACGTGAACCGTTAAACA200.12712133731646857No Hit
CGTAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA200.12712133731646857No Hit
CGGAAGGATCATTACCACATCAAAAAACTATCCACGTGAACCGTTAAACA200.12712133731646857No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTAAACCGTTAAACA200.12712133731646857No Hit
CGGAAGGATCATTCCACACCAAAAAACTATCCACGTGAACCGTTAAACAA190.12076527045064514No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCTCGTGAACCGTTAAACA180.11440920358482172No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCATGTGAACCGTTAAACA180.11440920358482172No Hit
CGGAAGGATCATTACTACACCAAAAAACTATCCACGTGAACCGTTAAACA180.11440920358482172No Hit
CGGAAGGATCATTACCACACCAAAAAACTATTCACGTGAACCGTTAAACA160.10169706985317485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)