FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi682.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi682.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13806
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC660547.84151818050123No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA424630.754744314066347No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATTAAA1481.0719976821671737No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATTAAAA810.5867014341590613No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATTAAA680.492539475590323No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC430.3114587860350572No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATTAAAAC390.2824858757062147No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC360.2607561929595828No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC350.25351296537737217No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA330.23902651021295088No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC320.23178328263074024No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC310.2245400550485296No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC310.2245400550485296No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC310.2245400550485296No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC300.21729682746631898No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC300.21729682746631898No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC300.21729682746631898No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC280.20281037230189775No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC280.20281037230189775No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATTAAA270.1955671447196871No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC270.1955671447196871No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC260.18832391713747645No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC260.18832391713747645No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC260.18832391713747645No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC250.18108068955526582No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC250.18108068955526582No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC250.18108068955526582No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAGCTGTATTAAA240.1738374619730552No Hit
CGGAAGGATCATTACCACACCTAAGAAACTTCCACGTGAACTGTATTAAA240.1738374619730552No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA240.1738374619730552No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC240.1738374619730552No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC230.16659423439084456No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC220.15935100680863393No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC210.1521077792264233No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC210.1521077792264233No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATTAAA210.1521077792264233No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTCCACGTGAACTGTATTAAA200.14486455164421266No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCATGTGAACTGTATCAAA200.14486455164421266No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC200.14486455164421266No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC190.13762132406200203No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTCCACGTGAACTGTATTAAA190.13762132406200203No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC190.13762132406200203No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTGTTAAA190.13762132406200203No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC180.1303780964797914No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTCCACGTGAACTGTATTAAA180.1303780964797914No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC180.1303780964797914No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC180.1303780964797914No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAGA170.12313486889758075No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAC170.12313486889758075No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC170.12313486889758075No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAG160.11589164131537012No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC160.11589164131537012No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC160.11589164131537012No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTCCACGTGAACTGTATTAAA160.11589164131537012No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTCCACGTGAACTGTATTAAA160.11589164131537012No Hit
CGGAAGGATTATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA150.10864841373315949No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTCCACGTGAACTGTATTAAA150.10864841373315949No Hit
CTGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA150.10864841373315949No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA150.10864841373315949No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAAGTGTATCAAA140.10140518615094887No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)