FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi674.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi674.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16735
Sequences flagged as poor quality0
Sequence length301
%GC43

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA623637.26322079474156No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC523531.281744846130866No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC12177.272184045413803No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATTAAA2381.4221691066626831No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATTAAAA1060.6334030475052286No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC890.5318195398864656No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA880.5258440394383029No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT830.49596653719749023No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATTAAAAC640.38243202868240217No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA610.3645055273379146No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA540.3226770242007768No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATTAAA480.2868240215118016No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC400.23902001792650132No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAC390.23304451747833882No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA390.23304451747833882No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC370.22109351658201373No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATTAAA350.2091425156856887No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTCCACGTGAACTGTATTAAA350.2091425156856887No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC330.1971915147893636No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAA320.19121601434120108No Hit
CGGAAGGATCATTACCACTCCAGCAGTGGATGTCTAGGCTCTGTCTCTTA320.19121601434120108No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCCCACGTGAACTGTATTAAA310.18524051389303853No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAG300.179265013444876No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTCCACGTGAACTGTATTAAA300.179265013444876No Hit
CGGAAGGATCATTACCACACCCAAAAAACTTCCACGTGAACTGTATTAAA290.1732895129967135No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTCCACGTGAACTGTATTAAA280.16731401254855094No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC280.16731401254855094No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC270.1613385121003884No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC270.1613385121003884No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC260.15536301165222588No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC260.15536301165222588No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAGCTGTATTAAA260.15536301165222588No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTCCACGTGAACTGTATTAAA250.14938751120406335No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAGA240.1434120107559008No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC240.1434120107559008No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCAACGTGAACTGTATCAA240.1434120107559008No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTCCACGTGAACTGTATTAAA240.1434120107559008No Hit
CGGAAGGATCATTACAACACCTAAAAAACTTCCACGTGAACTGTATTAAA240.1434120107559008No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATTAAA230.1374365103077383No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC230.1374365103077383No Hit
CGGAAGGATCATTACCACACATAAAAAACTTCCACGTGAACTGTATTAAA220.13146100985957573No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA220.13146100985957573No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGCGAACTGTATTAAA220.13146100985957573No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC210.1254855094114132No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTACTAAA210.1254855094114132No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCGCGTGAACTGTATTAAA210.1254855094114132No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC210.1254855094114132No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC200.11951000896325066No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC200.11951000896325066No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC200.11951000896325066No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC190.11353450851508815No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC190.11353450851508815No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATGAAC190.11353450851508815No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC190.11353450851508815No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTCCACGTGAACTGTATTAAA190.11353450851508815No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC180.1075590080669256No Hit
CGGAAGGATAATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA180.1075590080669256No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC170.10158350761876307No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC170.10158350761876307No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC170.10158350761876307No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)