FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH660.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH660.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4683
Sequences flagged as poor quality0
Sequence length301
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT143730.685458039718128No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT140630.02348921631433No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT2415.146273756139227No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1733.69421311125347No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT1082.3062139654067906No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC741.580183642963912No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA721.5374759769378605No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT621.323937646807602No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTT471.0036301516122144No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA370.790091821481956No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA300.6406149903907752No Hit
CGGAAGGATCATTACCACACCAAAGAAACTTACCACGTGAATCTGTACTT210.4484304932735426No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAGTCTGTACTT190.4057228272474909No Hit
CGGAAGGATCATTACCACCAAAAACAATCCACGTGAACCGTCAGAAATAG170.36301516122143923No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTTTC160.3416613282084134No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTTT160.3416613282084134No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGGACCGTCAGAAAT140.29895366218236175No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAGCCGTCAGAAAT130.2775998291693359No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGCCAGAAAT110.2348921631432842No Hit
CGGAAGGATCATTACCACACCAAAGACAATCCACGTGAACCGTCAGAAAT110.2348921631432842No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAAAA110.2348921631432842No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGAATCTGTACTT100.21353833013025839No Hit
CGGAAGGATCATTACCACACCAAAAGCAATCCACGTGAACCGTCAGAAAT100.21353833013025839No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT90.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACTCTGTACTT90.19218449711723257No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCCGTACTT80.1708306641042067No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACTGTCAGAAAT80.1708306641042067No Hit
CGGAAGGATCATTACAACACCAAAAAAACTTACCACGTGAATCTGTACTT80.1708306641042067No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTTAACCGTCAGAAAT80.1708306641042067No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC80.1708306641042067No Hit
CGGAAGGATCATTACCACACCAAAAAAACCTACCACGTGAATCTGTACTT70.14947683109118087No Hit
CGGAAGGATCATTACCACACCAAGAAAACTTACCACGTGAATCTGTACTT70.14947683109118087No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATTTGTACTT70.14947683109118087No Hit
CGGAAGGATCATTACCACACCAAGAACAATCCACGTGAACCGTCAGAAAT70.14947683109118087No Hit
CGGAAGGATCATTACCACACCAAAAACGATCCACGTGAACCGTCAGAAAT70.14947683109118087No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTGCTT70.14947683109118087No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGGAAT70.14947683109118087No Hit
CGGAATGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT70.14947683109118087No Hit
CGGAAGGATCATTACCACACCGAAAACAATCCACGTGAACCGTCAGAAAT60.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTGCCACGTGAATCTGTACTT60.12812299807815503No Hit
CGGAAGTATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT60.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAACAATACACGTGAACCGTCAGAAAT60.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACAGTCAGAAAT60.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAGT60.12812299807815503No Hit
CGGAAGTATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT60.12812299807815503No Hit
CGGAAGGATCATTACCAAACCAAAAAAACTTACCACGTGAATCTGTACTT60.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAATCTGTACTTTC60.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAATCTGTACTT60.12812299807815503No Hit
CGGAAGGATCATTACCACACCAGAAAAACTTACCACGTGAATCTGTACTT60.12812299807815503No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACCT60.12812299807815503No Hit
CGGAAGGATTATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAGAAACAATCCACGTGAACCGTCAGAAAT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAGAACTTACCACGTGAATCTGTACTT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTAAGAAAT50.10676916506512919No Hit
CGGAAGGATCATTACTACACCAAAAAAACTTACCACGTGAATCTGTACTT50.10676916506512919No Hit
CGGAAGGATCATTACCACGCCAAAAACAATCCACGTGAACCGTCAGAAAT50.10676916506512919No Hit
CTGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA50.10676916506512919No Hit
CGGAATGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCGCGTGAACCGTCAGAAAT50.10676916506512919No Hit
CGGAAGGATCATTACAACACCAAAAACAATCCACGTGAACCGTCAGAAAT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAAGACTTACCACGTGAATCTGTACTT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGAGAACCGTCAGAAAT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTAAATCTGTACTT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAACAGTCCACGTGAACCGTCAGAAAT50.10676916506512919No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTTAGAAAT50.10676916506512919No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)