FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH659.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH659.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14756
Sequences flagged as poor quality0
Sequence length301
%GC42

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1260385.40932502033071No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATGAAC940.6370290051504472No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC680.4608294930875576No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC560.3795066413662239No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC530.35917592843589047No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC460.3117375982651125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC420.2846299810246679No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC410.2778530767145568No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC400.27107617240444565No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA390.2642992680943345No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC390.2642992680943345No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC380.2575223637842234No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC370.25074545947411225No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC370.25074545947411225No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC350.23719165085388993No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC350.23719165085388993No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC340.2304147465437788No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC330.22363784223366767No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC330.22363784223366767No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC320.21686093792355648No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC320.21686093792355648No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC300.20330712930333425No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC300.20330712930333425No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC300.20330712930333425No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC300.20330712930333425No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC290.19653022499322312No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC290.19653022499322312No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC270.1829764163730008No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC270.1829764163730008No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC260.17619951206288967No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAC240.1626457034426674No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA210.14231499051233396No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC210.14231499051233396No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC200.13553808620222282No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATATCAAC190.1287611818921117No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC180.12198427758200055No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC180.12198427758200055No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTATCAAC170.1152073732718894No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC160.10843046896177824No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC160.10843046896177824No Hit
CGGAAGGATCATTACTACACCTAAAAACTTTCCACGTGAACCGTATCAAC160.10843046896177824No Hit
CGGAAGGATCATTATCACACCTAAAAACTTTCCACGTGAACCGTATCAAC150.10165356465166712No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)