FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH657.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH657.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1241
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT63851.41015310233682No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC37229.975825946817082No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACA191.5310233682514103No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA191.5310233682514103No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT80.6446414182111201No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT60.4834810636583401No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT60.4834810636583401No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT60.4834810636583401No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC60.4834810636583401No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC40.32232070910556004No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT40.32232070910556004No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT40.32232070910556004No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCACTTTGTA40.32232070910556004No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.24174053182917005No Hit
CGGAAAGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.24174053182917005No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTATCAACA30.24174053182917005No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT30.24174053182917005No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.24174053182917005No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCCCTTTGTA30.24174053182917005No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT30.24174053182917005No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC30.24174053182917005No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT30.24174053182917005No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.24174053182917005No Hit
CGGAAGGATTTACCACACCTAAAAACTTTCCACGTGAACCGTATCAACAA20.16116035455278002No Hit
CGGAAGGAGCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.16116035455278002No Hit
CGGAAGGATCATACCACACCAAAAACTATCCACGTGAACCACTTTGTATT20.16116035455278002No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCACTTTGTAT20.16116035455278002No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT20.16116035455278002No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGCAT20.16116035455278002No Hit
CGGAAGGATCATTACCACACCAAAACTATCCACGTGAACCACTTTGTATT20.16116035455278002No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.16116035455278002No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTGGTA20.16116035455278002No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCACTTTGTAT20.16116035455278002No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)