FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH628.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH628.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7781
Sequences flagged as poor quality0
Sequence length301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC341543.888960287880735No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT105113.50726127747076No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA7289.356123891530652No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT3844.935098316411772No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCCCGTGAACCGTATCAAC3444.42102557511888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC2543.26436190720987No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATCAA1101.4137000385554555No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC540.6939982007454054No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA380.4883691042282483No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATCAA300.3855545559696697No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC280.359850918905025No Hit
CGGAAGTATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC230.29559182624341346No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT230.29559182624341346No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACCGTGAACCGTATCAAC180.23133273358180184No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTTAACCGTATCAAC170.21848091504947947No Hit
CGGAAGGATTATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC160.20562909651715716No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATTAAC160.20562909651715716No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCAGTGAACCGTATCAAC160.20562909651715716No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAGCCGTATCAAC150.19277727798483485No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTCCCCCGTGAACCGTATCAAC150.19277727798483485No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTCCCCCGTGAACCGTATCAAC140.1799254594525125No Hit
CGGAAGGATCATTACCACACCTAAAAAATTCCCCCGTGAACCGTATCAAC130.1670736409201902No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTACCAAC120.15422182238786789No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA110.14137000385554557No Hit
CGGAATGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC110.14137000385554557No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACAGTATCAAC110.14137000385554557No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCGCTTTGTAT100.12851818532322323No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCGTGAACCGTATCAACC100.12851818532322323No Hit
CGGAAGGATCATTACCACACCCAAAAACTTCCCCCGTGAACCGTATCAAC100.12851818532322323No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAGC90.11566636679090092No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCCACGTGAACCGTATCAA90.11566636679090092No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTGTCAAC90.11566636679090092No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGGACCGTATCAAC90.11566636679090092No Hit
CGGAAGGATAATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC90.11566636679090092No Hit
CGGAAGGATCATTACCACACATAAAAACTTCCCCCGTGAACCGTATCAAC90.11566636679090092No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATAAAC90.11566636679090092No Hit
CGGAAGGATCATTACCACACCTAAAAACCTCCCCCGTGAACCGTATCAAC90.11566636679090092No Hit
CTGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC90.11566636679090092No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGCTTTGTA80.10281454825857858No Hit
CGGAAGGATCATTACCACACCTAAAGACTTCCCCCGTGAACCGTATCAAC80.10281454825857858No Hit
CGGAAGGATCATTATCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC80.10281454825857858No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTATCAACC80.10281454825857858No Hit
TGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC80.10281454825857858No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAATCGTATCAAC80.10281454825857858No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTATCAA80.10281454825857858No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)