FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH627.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH627.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8148
Sequences flagged as poor quality0
Sequence length301
%GC45

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT554668.06578301423663No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT6648.149239077074128No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA5026.161021109474718No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCGTTGTAA841.0309278350515463No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT560.6872852233676976No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT460.5645557191948944No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT300.3681885125184094No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC290.3559155621011291No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT260.31909671084928815No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT230.2822778595974472No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCACTTTGTAT220.2700049091801669No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT210.25773195876288657No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGAACCGTTGTAA210.25773195876288657No Hit
CGGAAGGATCATTACCACATCTCCGCAGCAGTGGATGTCTAGGCTCTGTC190.23318605792832597No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT170.20864015709376535No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT160.19636720667648502No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT160.19636720667648502No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT160.19636720667648502No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT160.19636720667648502No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA150.1840942562592047No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACTGTCGTTATT150.1840942562592047No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT140.1718213058419244No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC140.1718213058419244No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCACTTTGTAT140.1718213058419244No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCACTTTGTAT130.15954835542464407No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT130.15954835542464407No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT130.15954835542464407No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCACTTTGTAT130.15954835542464407No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT120.14727540500736377No Hit
CGGAAGGATCATTACCACACCAAAACTATCCACGTGAACCACTTTGTATT120.14727540500736377No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACTACTTTGTAT120.14727540500736377No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG120.14727540500736377No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT110.13500245459008345No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGCAT110.13500245459008345No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT110.13500245459008345No Hit
CTGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT100.12272950417280314No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCACTTTGTAT100.12272950417280314No Hit
CGTAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT90.11045655375552282No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT90.11045655375552282No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCACTTTGTAT90.11045655375552282No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)