FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH610.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH610.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3299
Sequences flagged as poor quality0
Sequence length301
%GC46

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA147744.77114277053653No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT44913.61018490451652No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTAATA33410.124280084874204No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA3259.851470142467415No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT491.4852985753258563No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC300.9093664746892999No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA210.6365565322825099No Hit
CGGAAGGATCATTACCACGTCGTCGTCAGCAGTGGATGTCTAGGCTCTGT190.5759321006365565No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTTAATAT150.45468323734464994No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC140.4243710215216732No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAACCA130.39405880569869656No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAAGCAA130.39405880569869656No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGCGAACCGTTAACCAA110.33343437405274323No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCACTTTGTA90.2728099424067899No Hit
CGGAAGGATCATTACCACACCTAAGACTATCCACGTGAACCGTTAACCAA90.2728099424067899No Hit
CGGAAGGATCATTACCACACCTAAAGCTATCCACGTGAACCGTTAACCAA70.2121855107608366No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTTAACCGTTAACCAA70.2121855107608366No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCGCGTGAACCGTTAACCAA70.2121855107608366No Hit
CGGAATGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA70.2121855107608366No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCACTTTGTAT70.2121855107608366No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCGA60.18187329493785995No Hit
CGGAAGGATCATTACCACACCTAAAACTACCCACGTGAACCGTTAACCAA60.18187329493785995No Hit
CGGAAGGATCATTACCACCTAAAACTATCCACGTGAACCGTTAACCAAAC60.18187329493785995No Hit
CGGAAGTATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA60.18187329493785995No Hit
CGGAAGGATAATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA50.1515610791148833No Hit
CGTAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCATTAACCAA50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTAAGCA50.1515610791148833No Hit
CGGAAGGATCATTACCACGCCTAAAACTATCCACGTGAACCGTTAACCAA50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAACTATCTACGTGAACCGTTAACCAA50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAG50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAGCCGTTAACCAA50.1515610791148833No Hit
CGGAAGGATCATTACCACACATAAAACTATCCACGTGAACCGTTAACCAA50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGCTAACCAA50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAGCCAA50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTTTAATA40.12124886329190664No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT40.12124886329190664No Hit
CGGAAGGATCATTACCACACCTAGAACTATCCACGTGAACCGTTAACCAA40.12124886329190664No Hit
CTGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA40.12124886329190664No Hit
CGGAAGGATCATTACCAAACCTAAAACTATCCACGTGAACCGTTAACCAA40.12124886329190664No Hit
CGGAAGGATCATTACCCCACCAAAAAACTATCCACGTGAACCGTTAAGCA40.12124886329190664No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGGACCGTTAACCAA40.12124886329190664No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTCAACCAA40.12124886329190664No Hit
CGGAAGGATCATTACAACACCTAAAACTATCCACGTGAACCGTTAACCAA40.12124886329190664No Hit
CGGAAGGATCATTACCACCAAAAAACTATCCACGTGAACCGTTAAGCAAA40.12124886329190664No Hit
CGGAAGGATCATTACCACACCCAAAACTATCCACGTGAACCGTTAACCAA40.12124886329190664No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT40.12124886329190664No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACAGTTAACCAA40.12124886329190664No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)