FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH603.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH603.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9144
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC457049.978127734033244No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA211823.16272965879265No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC5666.1898512685914255No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC670.7327209098862643No Hit
CGGAAGGATCATTACCACCTAAAACTTTCCACGTGAACCGTATCAAACAA390.42650918635170604No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTGAGTACGATCTC380.41557305336832895No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA370.4046369203849519No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAGCCGTATCAAAC310.3390201224846894No Hit
CGGAAGGATCATTACCACGCCTAAAACTTTCCACGTGAACCGTATCAAAC310.3390201224846894No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCGCGTGAACCGTATCAAAC290.31714785651793526No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGGACCGTATCAAAC290.31714785651793526No Hit
CGGAAGGATCATTACCACACCTAAAACTCTCCACGTGAACCGTATCAAAC280.30621172353455817No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTATCAAA260.28433945756780404No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTTAACCGTATCAAAC260.28433945756780404No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGCATCAAAC230.2515310586176728No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC220.2405949256342957No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAGC210.22965879265091863No Hit
CGGAAGGATCATTACCACACCTAAAACTTCCCACGTGAACCGTATCAAAC210.22965879265091863No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTACCAAAC200.21872265966754156No Hit
CGGAAGTATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC200.21872265966754156No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT200.21872265966754156No Hit
CGGAAGGATCATTACCACACCTAAAGCTTTCCACGTGAACCGTATCAAAC200.21872265966754156No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT190.20778652668416447No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAGAC180.19685039370078738No Hit
CGGAATGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC170.18591426071741032No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCGAAC160.17497812773403326No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGCGAACCGTATCAAAC160.17497812773403326No Hit
CGGAAGGATAATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC150.16404199475065617No Hit
CGGAAGGATCATTACCACACCCAAAACTTTCCACGTGAACCGTATCAAAC140.15310586176727908No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA130.14216972878390202No Hit
CGGAAGGATTATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC130.14216972878390202No Hit
CGGAAGGATCATTACCACACCTAAAACCTTCCACGTGAACCGTATCAAAC130.14216972878390202No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA130.14216972878390202No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA130.14216972878390202No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACAGTATCAAAC120.13123359580052493No Hit
CTGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC120.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA110.12029746281714784No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAATCGTATCAAAC110.12029746281714784No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA110.12029746281714784No Hit
CGGAAGGATCATTACCAAACCTAAAACTTTCCACGTGAACCGTATCAAAC110.12029746281714784No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA100.10936132983377078No Hit
CGGAAGGATCATACCACACCTAAAACTTTCCACGTGAACCGTATCAAACA100.10936132983377078No Hit
CGGAAGGATCATTACCACACCTAAGACTTTCCACGTGAACCGTATCAAAC100.10936132983377078No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA100.10936132983377078No Hit
CGGAAGGATCATTACCACACATAAAACTTTCCACGTGAACCGTATCAAAC100.10936132983377078No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)