FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH596.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH596.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2766
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA54019.522776572668114No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC39914.425162689804772No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA32911.894432393347795No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCCCGTGAACCGTATCAAC2027.302964569775849No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA1726.218365871294288No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG1475.314533622559653No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCGTTGTAA742.675343456254519No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC501.8076644974692697No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA401.4461315979754157No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTGTAA381.373825018076645No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT321.1569052783803326No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTG281.0122921185827911No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGAACCGTTGTAA190.6869125090383225No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTATCCACGTGAACCGTCAAA180.6507592190889371No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTCAAAA160.5784526391901663No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT150.5422993492407809No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT150.5422993492407809No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAACCAA130.4699927693420101No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTAACC130.4699927693420101No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAAAA110.39768618944323936No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGAACCGTCAAAA110.39768618944323936No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA110.39768618944323936No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC100.3615328994938539No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA90.32537960954446854No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA80.28922631959508316No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTGTAAC70.2530730296456978No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTATCAA70.2530730296456978No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA70.2530730296456978No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC60.21691973969631237No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGAAA60.21691973969631237No Hit
CGGAATGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA50.18076644974692696No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGACCCGTCAAAA50.18076644974692696No Hit
CGGAAGGATCATTACCACACCAAAAAACTTCCCCCGTGAACCGTATCAAC50.18076644974692696No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTACAAT40.14461315979754158No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTTGTAA40.14461315979754158No Hit
CGGAATGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA40.14461315979754158No Hit
CGGAAGGATCATTACCACACCAAAAAAACTGTCCACGTGAACCGTCAAAA40.14461315979754158No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAG40.14461315979754158No Hit
CGGAAGGATCATTACCACCAAAAAAACTTTCCACGTGAACCGTTGTAACT40.14461315979754158No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA40.14461315979754158No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTCCCCCGTGAACCGTATCAAC40.14461315979754158No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAGAA30.10845986984815618No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCGTTGTAA30.10845986984815618No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT30.10845986984815618No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTTAACCGTTGTAA30.10845986984815618No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTTCCACGTGACCCGTTGTAA30.10845986984815618No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTCAAAAAA30.10845986984815618No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTATCAACC30.10845986984815618No Hit
CGGAAGGATAATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC30.10845986984815618No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTG30.10845986984815618No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGACCCGTCAAAA30.10845986984815618No Hit
CGGAAGTATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC30.10845986984815618No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCGCGTGAACCGTTGTAA30.10845986984815618No Hit
TGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA30.10845986984815618No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC30.10845986984815618No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTAAAAA30.10845986984815618No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)