FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH580.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH580.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6093
Sequences flagged as poor quality0
Sequence length301
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT530086.98506482849172No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC2083.413753487608731No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACA240.3938946331856229No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT220.36107008042015426No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT190.3118332512719514No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCACTTTGTAT170.27900869850648286No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT160.26259642212374856No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT160.26259642212374856No Hit
CTGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT150.2461841457410143No Hit
CGTAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT130.2133595929755457No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT130.2133595929755457No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT120.19694731659281145No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT120.19694731659281145No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT110.18053504021007713No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT110.18053504021007713No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT110.18053504021007713No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT100.16412276382734287No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC100.16412276382734287No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCACTTTGTAT100.16412276382734287No Hit
CGGAAGGATCATTATCACACCAAAAACTATCCACGTGAACCACTTTGTAT90.14771048744460857No Hit
CGGAAGGACCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT70.11488593467914No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)