FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH576.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH576.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49
Sequences flagged as poor quality0
Sequence length301
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTAGGCTCTGTCTCTT2959.183673469387756No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTCGGCTCTGTCTCTT24.081632653061225No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC24.081632653061225No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCCAGTGAAACCGTATCTAT12.0408163265306123No Hit
CGGAAGGATCATTAACACCGTCAGCAGTGGATTTCTAGGCTCTGTCTCTT12.0408163265306123No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATATCTAGGCTCTGTCTCTT12.0408163265306123No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGGGCTGGGATTGACTCG12.0408163265306123No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT12.0408163265306123No Hit
AGCCCGGGAATGTATATCGGCGATACCGACGACGGTTCCGGCCTCCACCA12.0408163265306123No Hit
CGGAAGGGTCATTACCACCGTCAGCAGTGGATGTCTAGGCTCTGTCTCTT12.0408163265306123No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA12.0408163265306123No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT12.0408163265306123No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTAGGCTCTGGCTCTT12.0408163265306123No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGGTGTCTAGGCTCTGCTCTTA12.0408163265306123No Hit
AGACCCGGAATGTATATAGGCGGCACCGACGAGCGGGCCCTGCACCACCT12.0408163265306123No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTTGGCTCTGTCTCTT12.0408163265306123No Hit
AGGCCAGGTATGTACATAGGCGACACCGACGACGGATCGGGCCTCCACCA12.0408163265306123No Hit
AGACCTGGGATGTACATCGGCGATACCGACGACGGTTCCGGCCTTCACCA12.0408163265306123No Hit
CGGCCGGGTATGTATATCGGCTCCACGGGGATCCGTGGCCTGCACCACCT12.0408163265306123No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)