FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOATH574.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOATH574.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12071
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC887873.5481733079281No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT126910.512799270980034No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA900.7455886007787259No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC550.4556374782536658No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC460.3810786181757932No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC420.34794134703007207No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC400.33137271145721153No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC400.33137271145721153No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC340.28166680473862976No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC340.28166680473862976No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC320.26509816916576917No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC300.24852953359290864No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC300.24852953359290864No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC300.24852953359290864No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC280.23196089802004805No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC270.22367658023361775No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATGAAC260.21539226244718748No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC260.21539226244718748No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC250.20710794466075721No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC250.20710794466075721No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC230.1905393090878966No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC230.1905393090878966No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC220.1822549913014663No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC210.17397067351503603No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC210.17397067351503603No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT200.16568635572860577No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC200.16568635572860577No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC200.16568635572860577No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC200.16568635572860577No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCACTTTGTA200.16568635572860577No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC200.16568635572860577No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA190.15740203794217547No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC190.15740203794217547No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC180.14911772015574518No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC180.14911772015574518No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC170.14083340236931488No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT160.13254908458288459No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTATCAAC150.12426476679645432No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT150.12426476679645432No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC140.11598044901002402No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA140.11598044901002402No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC140.11598044901002402No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAC140.11598044901002402No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC140.11598044901002402No Hit
CGGAAGGATCTTACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA130.10769613122359374No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)