FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBDve269.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBDve269.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3458
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14459224985540775No Hit
AGGCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14459224985540775No Hit
AGGCCTGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11567379988432619No Hit
CGCCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11567379988432619No Hit
AGGCCGGGGATGTATATTGGCGATACCGACGACGGATCGGGCCTCCACCA40.11567379988432619No Hit
AGGCCAGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11567379988432619No Hit
CGTCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11567379988432619No Hit
AGGCCGGGCATGTACATAGGCGATACCGACGACGGATCGGGCCTCCACCA40.11567379988432619No Hit
AGTCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11567379988432619No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)