FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBDve258.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBDve258.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15826
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG360.22747377732844687No Hit
AGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG330.20851762921774297No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG310.19588019714394034No Hit
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG300.18956148110703905No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG280.17692404903323644No Hit
AGGCCCGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG280.17692404903323644No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG260.16428661695943383No Hit
AGACCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG250.15796790092253254No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG250.15796790092253254No Hit
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG240.15164918488563123No Hit
AGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG230.14533046884872994No Hit
AGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG220.13901175281182862No Hit
AGTCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG210.13269303677492733No Hit
AGGCCGGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG210.13269303677492733No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG210.13269303677492733No Hit
AGGCCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG210.13269303677492733No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG200.12637432073802604No Hit
AGGCCCGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG200.12637432073802604No Hit
AGGCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG200.12637432073802604No Hit
CGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG200.12637432073802604No Hit
AGACCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG200.12637432073802604No Hit
AGTCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG200.12637432073802604No Hit
AGGCCTGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.12005560470112472No Hit
AGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.12005560470112472No Hit
AGGCCTGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.12005560470112472No Hit
AGTCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.12005560470112472No Hit
AGTCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.12005560470112472No Hit
AGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.12005560470112472No Hit
AGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.11373688866422343No Hit
AGTCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.11373688866422343No Hit
AGTCCAGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.11373688866422343No Hit
CGACCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.11373688866422343No Hit
AGGCCCGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.11373688866422343No Hit
AGTCCTGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.11373688866422343No Hit
AGGCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.11373688866422343No Hit
AGGCCTGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.11373688866422343No Hit
CGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGACCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGTCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGTCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGTCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
CGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGGCCTGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGGCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGCCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGACCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGGCCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.10741817262732213No Hit
AGGCCCGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGGCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGACCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGGCCCGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
CGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGTCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGGCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGGCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGGCCAGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
CGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGTCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGGCCGGGCATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit
AGACCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.10109945659042083No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)