FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi98.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi98.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6559
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCTGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15246226558926665No Hit
AGGCCCGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12196981247141334No Hit
AGACCTGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12196981247141334No Hit
AGGCCAGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12196981247141334No Hit
AGGCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12196981247141334No Hit
AGACCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12196981247141334No Hit
CGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12196981247141334No Hit
AGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10672358591248667No Hit
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10672358591248667No Hit
CGGCCCGCTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10672358591248667No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10672358591248667No Hit
AGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10672358591248667No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10672358591248667No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)