FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi188.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi188.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9692
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.1960379694593479No Hit
AGTCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.17540239372678498No Hit
AGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.17540239372678498No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.17540239372678498No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.15476681799422204No Hit
AGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.15476681799422204No Hit
AGGCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.15476681799422204No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.15476681799422204No Hit
AGACCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.14444903012794055No Hit
AGGCCCGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.14444903012794055No Hit
AGTCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.14444903012794055No Hit
CGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1341312422616591No Hit
AGCCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1341312422616591No Hit
AGGCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1341312422616591No Hit
CGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1341312422616591No Hit
AGGCCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1341312422616591No Hit
AGGCCTGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.12381345439537762No Hit
AGGCCCGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.12381345439537762No Hit
AGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.12381345439537762No Hit
CGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.12381345439537762No Hit
CGGCCAGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.12381345439537762No Hit
AGTCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.12381345439537762No Hit
AGGCCGGCCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGACCCGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGGCCTGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGTCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGACCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGGCCAGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGGCCGGCGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGGCCCGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.11349566652909615No Hit
AGTCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCCGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCGGGTATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGTCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGACCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCGGGAATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGCCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
CGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCGGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCAGGCATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGACCAGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGTCCGGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCTGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCTGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
CGTCCAGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGTCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
CGACCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGTCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
AGGCCGGGAATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit
CGTCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.10317787866281469No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)