FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi187.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi187.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10570
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG250.23651844843897823No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG250.23651844843897823No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG210.1986754966887417No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.17975402081362346No Hit
AGTCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.17029328287606432No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.15137180700094607No Hit
AGGCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.15137180700094607No Hit
AGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.15137180700094607No Hit
AGACCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.15137180700094607No Hit
AGTCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.14191106906338694No Hit
CGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.14191106906338694No Hit
AGGCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.14191106906338694No Hit
AGACCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.13245033112582782No Hit
AGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.13245033112582782No Hit
AGTCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.13245033112582782No Hit
AGTCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.13245033112582782No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.13245033112582782No Hit
AGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.13245033112582782No Hit
AGTCCAGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.12298959318826869No Hit
AGTCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.12298959318826869No Hit
AGACCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.12298959318826869No Hit
AGACCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.12298959318826869No Hit
AGGCCCGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
CGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGGCCGGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGGCCGGGAATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGCCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGACCAGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGGCCGGGCATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
CGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGCCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGTCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.11352885525070955No Hit
AGTCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
CGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGGCCGGGAATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGACCGGCTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
CGGCCTGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGGCCAGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGTCCCGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGCCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGGCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGACCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGGCCTGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGTCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit
AGTCCAGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.10406811731315042No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)