FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi186.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi186.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7188
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG180.25041736227045075No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.23650528658875902No Hit
AGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.20868113522537562No Hit
CGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.19476905954368393No Hit
AGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.19476905954368393No Hit
AGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1808569838619922No Hit
AGTCCTGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1808569838619922No Hit
AGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.1669449081803005No Hit
AGGCCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.1669449081803005No Hit
AGGCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1530328324986088No Hit
AGGCCTGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1530328324986088No Hit
AGTCCTGCTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1530328324986088No Hit
AGTCCTGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1530328324986088No Hit
AGGCCTGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1530328324986088No Hit
AGGCCCGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1530328324986088No Hit
AGGCCTGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1530328324986088No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGGCCGGGAATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGGCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGACCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGACCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGGCCAGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGTCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGGCCTGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGACCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGACCTGGAATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13912075681691707No Hit
AGCCCGGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGTCCAGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
CGTCCAGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCTGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
CGCCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCCGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCAGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
CGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGTCCGGGTATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCTGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGACCAGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
CGCCCCGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCAGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGTCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12520868113522537No Hit
AGGCCTGGCATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGACCTGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCCGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGACCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGCCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGACCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGACCTGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCAGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGACCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCTGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGGCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGACCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCCGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGGCCCGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGACCGGGCATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCCGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCTGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGACCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGCCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGCCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGACCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCGGCGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCAGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCTGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGACCTGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCGGGAATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCCGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGTCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGTCCAGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
AGGCCGGGGATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit
CGGCCTGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11129660545353368No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)