FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi185.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi185.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6546
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.2597005805071799No Hit
AGTCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.229147571035747No Hit
AGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.229147571035747No Hit
AGGCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.21387106630003055No Hit
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1985945615643141No Hit
AGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1985945615643141No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1985945615643141No Hit
AGGCCGGCGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1985945615643141No Hit
AGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1985945615643141No Hit
AGGCCGGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.18331805682859761No Hit
AGTCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.16804155209288116No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.16804155209288116No Hit
AGGCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.16804155209288116No Hit
AGGCCGGCGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.16804155209288116No Hit
AGACCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.16804155209288116No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGGCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGCCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGGCCTGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGGCCCGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGTCCTGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGACCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
CGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGGCCTGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGTCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.15276504735716467No Hit
AGTCCGGCCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGGCCGGCTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGTCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGGCCTGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGGCCGGCAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGACCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGGCCTGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGACCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGTCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
CGGCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGTCCTGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGACCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
CGCCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGTCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGTCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13748854262144822No Hit
AGGCCAGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGTCCGGCAATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGGCCGGGCATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGACCAGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGGCCCGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGTCCGGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGTCCGGGCATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGTCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
CGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
CGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
CGTCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGGCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGACCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGACCTGGAATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGCCCGGCAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGGCCCGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.12221203788573175No Hit
AGCCCGGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGACCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGTCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGTCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCTGGCATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCAGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGCCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGTCCCGCTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGGCCTGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGGCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCGGGTATGTATATCGGATCCACGGGTCCGCGCGGTCTCCACCACCT70.10693553315001528No Hit
AGTCCTGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCGGCTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCGGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGACCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGACCAGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCTGCTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCAGCGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGTCCTGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGCCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCGGGAATGTATATTGGATCCACGGGTCCGCGCGGTCTCCACCACCT70.10693553315001528No Hit
CGGCCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGACCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGACCCGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGTCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGACCGGGAATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGTCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGGCCCGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGGCCCGGAATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGTCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGTCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
CGGCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGCCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit
AGTCCAGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10693553315001528No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)