FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi171.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi171.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11248
Sequences flagged as poor quality0
Sequence length301
%GC65

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG250.22226173541963018No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.16891891891891891No Hit
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG190.16891891891891891No Hit
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG170.1511379800853485No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.13335704125177808No Hit
AGGCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.13335704125177808No Hit
AGGCCGGGAATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.13335704125177808No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.13335704125177808No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.12446657183499288No Hit
AGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.12446657183499288No Hit
AGTCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.11557610241820769No Hit
AGTCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.11557610241820769No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.11557610241820769No Hit
CGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.10668563300142249No Hit
AGACCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.10668563300142249No Hit
CGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.10668563300142249No Hit
AGACCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.10668563300142249No Hit
AGTCCTGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.10668563300142249No Hit
AGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.10668563300142249No Hit
AGGCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.10668563300142249No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)