FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi165.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi165.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1225
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACCAGCCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.163265306122449No Hit
AGACCGGCTATGTATATCGGCGATACCGACGACGGCTCCGGCCTGCACCA20.163265306122449No Hit
AGGCCAGGCATGTATATCGGCGACACCTCCGACGGCACCGGCCTGCACCA20.163265306122449No Hit
CGTCCCGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.163265306122449No Hit
CGACCCGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.163265306122449No Hit
CGCCCCGGTATGTATATTGGCGATACCGACGACGGCTCGGGCCTGCATCA20.163265306122449No Hit
AGGCCGGCTATGTATATCGGCGACGTGCACGACGGCACCGGCCTGCACCA20.163265306122449No Hit
AGGCCTGCGATGTACATCGGCGGCACCGACGAGAAGGCCCTGCATCACCT20.163265306122449No Hit
AGGCCGGGGATGTACATTGGCGACACCGACGACGGTTCCGGTCTCCACCA20.163265306122449No Hit
CGACCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.163265306122449No Hit
AGACCGGGCATGTATATTGGCGGTACGGACGAAAAGGCGCTGCATCATCT20.163265306122449No Hit
CGACCCGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.163265306122449No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)