FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi141.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi141.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1694
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCTGGTATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA30.1770956316410862No Hit
AGGCCAGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.11806375442739078No Hit
AGGCCGGGTATGTATATTGGCGACACCGACGACGGCTCGGGCCTGCACCA20.11806375442739078No Hit
AGCCCCGGGATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
AGGCCGGGGATGTACATTGGGTCCACCGGTGAGCGCGGCCTGCACCACCT20.11806375442739078No Hit
AGTCCCGGTATGTATATCGGCGACACCGACGACGGCTCGGGCCTCCACCA20.11806375442739078No Hit
AGGCCAGGTATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
CGTCCGGGAATGTACATCGGGTCCACCGGCGAGCGCGGACTGCACCTCCT20.11806375442739078No Hit
AGTCCCGGCATGTATATTGGCGACACCGACGACGGCTCGGGCCTCCACCA20.11806375442739078No Hit
AGGCCAGGTATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC20.11806375442739078No Hit
AGACCTGCGATGTATATCGGATCCACCGACTCGCGCGGCCTCATGCATTG20.11806375442739078No Hit
AGTCCTGCCATGTACATTGGCGACACCGACGACGGATCGGGCCTCCACCA20.11806375442739078No Hit
AGTCCTGGAATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
CGTCCGGGTATGTACATCGGCGATACCGATGACGGGTCGGGGCTGCACCA20.11806375442739078No Hit
AGACCTGGAATGTATATGGCGACACCTCCGACGGCACGGGCCTGCACCAC20.11806375442739078No Hit
AGGCCGGCGATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
CGCCCGGCAATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
AGACCTGGTATGTATATTGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
AGCCCGGGGATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
AGGCCGGGGATGTACATCGGCGACACCTCCGACGGCACCGGCCTGCACCA20.11806375442739078No Hit
AGGCCGGCTATGTGTATTGGCTCCACCGGCCCGCGCGGCCTGCACCACCT20.11806375442739078No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.11806375442739078No Hit
CGACCTGGGATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
CGACCGGCTATGTATATCGGCGACACCGACGACGGTTCCGGCCTCCACCA20.11806375442739078No Hit
AGGCCTGGCATGTATATCGGCTCCACCGGTGAGCGCGGCCTGCACCACCT20.11806375442739078No Hit
CGTCCGGCTATGTATATCGGCGATACCGACGACGGCTCGGGCCTGCACCA20.11806375442739078No Hit
CGGCCCGGGATGTATATCGGCGACACCGACGACGGTTCCGGCCTCCACCA20.11806375442739078No Hit
CGGCCGGGAATGTATATCGGCGACACCTCCGACGGCACCGGCCTGCACCA20.11806375442739078No Hit
AGCCCGGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.11806375442739078No Hit
AGGCCGGGCATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.11806375442739078No Hit
AGGGCCGGGGATGTACATTGGGACGACGGACTCCCGCGGACTCATGCACT20.11806375442739078No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)