FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBChi117.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBChi117.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2791
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCTGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA50.17914725904693657No Hit
AGGCCGGCTATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA40.14331780723754925No Hit
AGCCCGGGTATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA40.14331780723754925No Hit
AGGCCTGGTATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.10748835542816196No Hit
CGGCCGGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.10748835542816196No Hit
CGACCGGGCATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA30.10748835542816196No Hit
AGGCCTGGTATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA30.10748835542816196No Hit
AGACCGGGCATGTACATTGGCAACACCGACGACGGCTCGGGCCTGCACCA30.10748835542816196No Hit
AGACCAGGGATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA30.10748835542816196No Hit
CGGCCTGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.10748835542816196No Hit
AGGCCGGGTATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA30.10748835542816196No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)