FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBATH62.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBATH62.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1575
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.25396825396825395No Hit
AGGCCAGGGATGTACATCGGATCGACTGACCAGCGCGGATTGCACCATCT20.12698412698412698No Hit
CGACCTGGGATGTATATCGGCTCCACCGGCGAGCGCGGCCTGCACCACCT20.12698412698412698No Hit
AGACCGGGGATGTATATCGGTTCGACCGACTCGCGCGGGCTCATGCACTG20.12698412698412698No Hit
CGGCCGGCCATGTACATCGGCAACACCGACGACGGCTCGGGCCTGCACCA20.12698412698412698No Hit
CGACCTGCCATGTATATAGGCTCCACCGGGGAACGCGGCTTGCACCACCT20.12698412698412698No Hit
AGTCCTGCGATGTATATCGGCGGCACCGACGAAAAGGCTCTGCATCACCT20.12698412698412698No Hit
CGGCCTGGTATGTACATCGGCTCGACCGGCGAGCGCGGCCTGCACCACAT20.12698412698412698No Hit
CGACCTGGTATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCATCA20.12698412698412698No Hit
CGGCCAGGGATGTATATCGGCTCCACCGGCGAGCGCGGCCTGCACCACCT20.12698412698412698No Hit
CGGCCGGGGATGTACATCGGCTCCACCGGTGAGCGCGGCCTGCACCACCT20.12698412698412698No Hit
AGGCCCGGTATGTACATCGGCGGCACCGACGAACGCGCGCTGCATCATCT20.12698412698412698No Hit
AGGCCGGGAATGTATATTGGCTCCACCGGGGAACGCGGCTTGCACCACCT20.12698412698412698No Hit
AGGCCCGCGATGTATATCGGCAACACCGACGACGGCTCGGGCCTGCACCA20.12698412698412698No Hit
AGACCGGGGATGTACATCGGCGACACCGACGACGGCTCGGGTCTGCACCA20.12698412698412698No Hit
AGTCCCGCTATGTATATCGGCTCCACCGGTGCGGCGGGGTTGCATCACCT20.12698412698412698No Hit
CGACCGGGGATGTATATTGGCTCGACCGGCGAGCGCGGCCTGCACCACAT20.12698412698412698No Hit
CGGCCCGGCATGTACATTGGCGACACCGATGACGGCTCCGGCCTGCATCA20.12698412698412698No Hit
AGCCCGGGGATGTACATCGGCTCCACCGGCGAGCGCGGCCTGCACCACCT20.12698412698412698No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)