FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBATH37.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBATH37.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43
Sequences flagged as poor quality0
Sequence length301
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG511.627906976744185No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG36.976744186046512No Hit
AGACCGGGGATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA12.3255813953488373No Hit
AGGCCAGGCATGTATATTGGCGGCACGGACGAAAAGGCGCTGCATCATCT12.3255813953488373No Hit
CGCCCGGGGATGTATATTGGCGATACAGACGACGGTAGCGGTCTGCATCA12.3255813953488373No Hit
AGGCCGGGAATGTACATAGGCGACATGTCGGACGGCACGGGCCTGCACCA12.3255813953488373No Hit
CGGCCTGGGATGTATATTGGTTCCACCTGTGAGCGCGGTCTGCACCACCT12.3255813953488373No Hit
AGGCCTGCGATGTATATAGGCTCGACCGGCGTCCGCGGCCTGCACCACCT12.3255813953488373No Hit
CGCCCTGCGATGTATATAGGGTCGACCGGTGCGGCCGGGCTCCATCACCT12.3255813953488373No Hit
CGGCCGGCAATGTACATTGGCGACACCGACGACGGGTCGGGCCTGCACCA12.3255813953488373No Hit
AGACCGGCGATGTATATCGGCGATACCGACGACGGGTCGGGCCTCCACCA12.3255813953488373No Hit
CGCCCGGGGATGTACATCGGGGACACGACCTCGCGCGGCTACCACCATTT12.3255813953488373No Hit
AGCCCCGCCATGTATATTGGCGACACCGACGATGGCTCGGGCCTGCACCA12.3255813953488373No Hit
CGACCGGCGATGTATATAGGCGACACGTCCGACGGCACCGGTCTGCACCA12.3255813953488373No Hit
CGGCCAGCCATGTATATCGGCGATACCGACGACGGATCGGGCCTCCACCA12.3255813953488373No Hit
CGACCCGGTATGTACATCGGCTCCACCGGCGAGCGCGGCCTGCACCACAT12.3255813953488373No Hit
AGTCCAGCCATGTATATCGGCGACACCGACGACGGCTCGGGTCTGCACCA12.3255813953488373No Hit
CGTCCCGGGATGTATATCGGCGACACCGACGACGGCTCGGGCCTGCACCA12.3255813953488373No Hit
CGTCCGGCTATATACATCGGCGACACCGACGACGGTTCCGGTCTCCACCA12.3255813953488373No Hit
CGGCCGGGCATGTATATCGGCGACACCGACGACGGGTCCGGCCTCCACCA12.3255813953488373No Hit
AGTCCCGGGATGTATATTGGCGATACCGACGACGGATCGGGCCTCCACCA12.3255813953488373No Hit
AGGCCTGGAATGTATATTGGGTCGACCGGCGAGCGCGGACTGCACCACCT12.3255813953488373No Hit
AGTCCTGCAATGTACATCGGCGGCACCGACGCCAATGCGCTGCACCATCT12.3255813953488373No Hit
AGGCCAGGTATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA12.3255813953488373No Hit
AGACCGGGGATGTATATCGGGTCGACCGGTCCACGCGGCCTGCATCACCT12.3255813953488373No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATTTTTCCGTAGGTG12.3255813953488373No Hit
CGTCCCGGAATGTATATTGGCGACACCGACGACTGCTCTGGCCTCCACCA12.3255813953488373No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGCGAACCGCCAGAAAT12.3255813953488373No Hit
AGCCCCGCCATGTACATCGGCGACACCGACGATGGATCGGGCCTCCATCA12.3255813953488373No Hit
AGGCCGGGTATGTACATCGGCTCGACGGGCCCGCGCGGTCTGCACCACCT12.3255813953488373No Hit
CGCCCTGGGATGTACATAGGCGACACGTCGGACGGCACCGGGCTCCACCA12.3255813953488373No Hit
AGCCCGGGTATGTATATTGGGGACACGACCTCGCGCGGCTCCCACCATTT12.3255813953488373No Hit
AGACCGGGCATGTATATCGGGGACACGACCTCGCGCGGGTATCACCACTT12.3255813953488373No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC12.3255813953488373No Hit
AGCCCGGGAATGTATATCGGTTCGACCGGCCCCCGCGGACTCCACCACCT12.3255813953488373No Hit
CGCCCTGGCATGTATATAGGCGACACCTCCGACGGCACCGGCCTGCACCA12.3255813953488373No Hit
CGGCCAGGGATGTATATCGGGGACACGACCTCGCGCGGCTACCACCATTT12.3255813953488373No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)